Pairwise Alignments

Query, 270 a.a., tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) from Variovorax sp. SCN45

Subject, 264 a.a., tRNA pseudouridine(38-40) synthase TruA from Vibrio cholerae E7946 ATCC 55056

 Score =  238 bits (607), Expect = 1e-67
 Identities = 122/254 (48%), Positives = 161/254 (63%), Gaps = 4/254 (1%)

Query: 1   VRLALGIRYNGQAYEGWQSQRSGRTVQDKLEAALSKFAAQPIGTLCAGRTDAGVHALMQV 60
           +R+ALGI Y+G  Y GWQ QR  ++VQ+ LE ALSK A  P+   CAGRTDAGVH   QV
Sbjct: 1   MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60

Query: 61  VHFDTTVEREPFSWMRGPNRFLPDDIAVQWAQPVPDEFHCRASALARRYLYVLSQSPVRP 120
           VHFDTT ER+  +W  G N  LP DIAV+WA  VPDEFH R SA ARRY YV+     RP
Sbjct: 61  VHFDTTAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVYRP 120

Query: 121 SLDTGRVGWSMHALDGDAMRAAAALLVGRHDFSSFRASACQARSPVKDLRRIEITRVGEG 180
            +    V      LD + M+ A   L+G +DF+SFRA  CQ+RSP +++  + +TR G  
Sbjct: 121 GILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHGR- 179

Query: 181 ERCRWHFEFEADAFLHHMIRNLMGCLVRIGRGDEPVEWISQVLEARSRKVAAPTFSADGL 240
                  + +A+AF+HHM+RN+ G L+ +GRG++  EWI  +L  + R +AA T  A+GL
Sbjct: 180 ---YVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGL 236

Query: 241 YFLGPLYDAKWGLP 254
           Y +   Y A +GLP
Sbjct: 237 YLVSVDYPAHFGLP 250