Pairwise Alignments

Query, 270 a.a., tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) from Variovorax sp. SCN45

Subject, 261 a.a., tRNA pseudouridine synthase A (RefSeq) from Shewanella loihica PV-4

 Score =  214 bits (546), Expect = 1e-60
 Identities = 113/254 (44%), Positives = 152/254 (59%), Gaps = 4/254 (1%)

Query: 1   VRLALGIRYNGQAYEGWQSQRSGRTVQDKLEAALSKFAAQPIGTLCAGRTDAGVHALMQV 60
           +R+ALGI Y+G  Y GWQ Q    +VQ +LE ALS  A +PI   CAGRTDAGVHA  QV
Sbjct: 1   MRVALGIEYDGSRYFGWQRQAEVDSVQAQLERALSFVANEPISIQCAGRTDAGVHATGQV 60

Query: 61  VHFDTTVEREPFSWMRGPNRFLPDDIAVQWAQPVPDEFHCRASALARRYLYVLSQSPVRP 120
           VHF+T   R+  +W  G N  LPDDIAV+WA+ V DEFH R +A ARRY Y++     RP
Sbjct: 61  VHFETNAVRKESAWTLGVNVNLPDDIAVRWAKDVDDEFHARFTATARRYRYMIYNHQFRP 120

Query: 121 SLDTGRVGWSMHALDGDAMRAAAALLVGRHDFSSFRASACQARSPVKDLRRIEITRVGEG 180
            +    V      +D   M  AA  L+G  DF+SFRA  CQ+ +P + +  + +TR G  
Sbjct: 121 GILRSGVSHYPGQIDEAKMHEAAQFLLGEQDFTSFRAIQCQSNTPFRCVHEVNVTRQG-- 178

Query: 181 ERCRWHFEFEADAFLHHMIRNLMGCLVRIGRGDEPVEWISQVLEARSRKVAAPTFSADGL 240
                  + +A+AFLHHM+RN++G L+ +G G +PV WI ++L  + R  AA T   +GL
Sbjct: 179 --MYICVDIKANAFLHHMVRNIVGSLLEVGYGRQPVSWIKELLALKDRTQAAATAKPNGL 236

Query: 241 YFLGPLYDAKWGLP 254
           Y +   Y   + LP
Sbjct: 237 YLVDVTYPEHYALP 250