Pairwise Alignments

Query, 225 a.a., RNA polymerase sigma factor RpoE from Variovorax sp. SCN45

Subject, 190 a.a., RNA polymerase sigma-E factor from Pseudomonas fluorescens FW300-N2E2

 Score = 76.6 bits (187), Expect = 3e-19
 Identities = 54/188 (28%), Positives = 95/188 (50%), Gaps = 10/188 (5%)

Query: 22  APRPGEVDFQLVQRTVAGDQKAFELLVIKYQRRIERLIGRMVRDVDLIEDIAQETFIRAY 81
           AP     D  L+ R   GD  +FE+L  ++++ + R +  +    +L E+I Q+T++   
Sbjct: 3   APIDPPSDESLLARYRNGDGASFEVLYARHRQGLYRFLVSLSNKAELAEEIFQDTWLSLI 62

Query: 82  RALHQFRGEAQFYTWLYRIAVNTAKKALVDMKRDPTVSEAALRPSSEDEDETYRPGNEPT 141
           R+  Q +G A F TWL++IA N     L+D  R     +    P  +  DE      + T
Sbjct: 63  RSATQPQGRASFRTWLFQIARN----RLIDHWR----KQGVHNPLHDSYDEQLHVQPDDT 114

Query: 142 TDETPESVLAANEIARAVEAAMEALPAELRQAVTLREIEGMSYEEIAEVMDCPIGTVRSR 201
           T  +PE  L+ +     ++AA++ALP + R+   LR    +   +IA +   P+ TV+SR
Sbjct: 115 T--SPEQQLSLSRDQARLDAALQALPEDQREVFLLRLHGDLELPQIAALTGAPLETVKSR 172

Query: 202 IFRAREAI 209
           +  A++ +
Sbjct: 173 LRYAQQKL 180