Pairwise Alignments

Query, 1068 a.a., Ribonuclease E (EC 3.1.26.12) from Variovorax sp. SCN45

Subject, 489 a.a., ribonuclease E/G from Vibrio cholerae E7946 ATCC 55056

 Score =  271 bits (693), Expect = 8e-77
 Identities = 163/466 (34%), Positives = 261/466 (56%), Gaps = 12/466 (2%)

Query: 4   MLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYGED 63
           +L+N T +E R +A+++G  L +  IE E +    GNIYK  V+RV P ++A FVD G D
Sbjct: 5   LLLNVTPSETR-VAMIEGGILQEIHIEREAKRGIVGNIYKGKVSRVLPGMQAAFVDIGLD 63

Query: 64  RHGFLPFKEISKQYFAEGVSASQAR------IQDAIREGQELTVQVEKEERGNKGAALTT 117
           +  FL   +I      E V+ S+ +      I + +R+GQ++ VQV K+  G KGA LTT
Sbjct: 64  KAAFLHASDIVPH--TECVAESEKQQFQVRDISELVRQGQDIVVQVVKDPLGTKGARLTT 121

Query: 118 FISLAGRYVVLMPNNPRGGGVSRRIEGD-DRAELKEAMDQLEYPKGMSIIARTAGIGRSA 176
            I+L  RY+V MP     G VS+RIE + +R  LK+ +       G  II RTA  G + 
Sbjct: 122 DITLPSRYLVFMPGASHVG-VSQRIESEAERERLKKIVSHYCDEHGGFII-RTAAEGANE 179

Query: 177 PELQWDLNYLLKLWSAIDGAAKGGKGAFLIYQESSLVIRAIRDYFNHDIGDILIDTDDIY 236
            EL  D  +L +LWS +       K   ++Y E  L  R +RD+   ++  ILID+   +
Sbjct: 180 KELTQDAAFLKRLWSKVIERRSKYKNRSMLYGELGLAQRILRDFVGTELTKILIDSRQEF 239

Query: 237 DQAQQFMAHVMPEHAARVKRYRDDAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEA 296
           +  ++F +  +PE  A+++ Y  D  +F  +  E++I+ +  R V+L SGG ++ID TEA
Sbjct: 240 ENLKEFTSEYVPELTAKLELYHGDKPIFDMYDTENEIQRSLERKVELKSGGYLIIDQTEA 299

Query: 297 LVSVDVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMDESKNRRE 356
           + ++D+N+   +   ++EET   TN+EA   +ARQ+RLR+LGG+I+IDFIDM   ++R+ 
Sbjct: 300 MTTIDINTGAFVGRRNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKR 359

Query: 357 VESRLRDALRQDRARVQFGSISKFGLMEMSRQRLKPALSEGSSIPCPRCGGSGHIRDTES 416
           V + L  AL +DR +      ++ GL+EM+R+R + ++       CP C G G ++  E+
Sbjct: 360 VLTSLETALMKDRVKTNINGFTQLGLVEMTRKRTRESIEHVLCSTCPTCEGRGSVKTVET 419

Query: 417 SALQILRIIQEESMKDNTAAVHVQVPVEVASFLLNEKRPEIAKIEL 462
              +ILR I   +   +     V     VA  L  E+   +A++E+
Sbjct: 420 VCFEILREITRVNRAYDADKFVVYASPAVADTLQGEESHALAELEV 465