Pairwise Alignments

Query, 1068 a.a., Ribonuclease E (EC 3.1.26.12) from Variovorax sp. SCN45

Subject, 978 a.a., ribonuclease E from Phaeobacter inhibens DSM 17395

 Score =  392 bits (1007), Expect = e-113
 Identities = 207/401 (51%), Positives = 276/401 (68%), Gaps = 1/401 (0%)

Query: 88  RIQDAIREGQELTVQVEKEERGNKGAALTTFISLAGRYVVLMPNNPRGGGVSRRI-EGDD 146
           +IQ+ I+  Q L VQV KEERGNKGAALTT++SLAGRY VLMPN  RGGG+SR+I    D
Sbjct: 278 KIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAAD 337

Query: 147 RAELKEAMDQLEYPKGMSIIARTAGIGRSAPELQWDLNYLLKLWSAIDGAAKGGKGAFLI 206
           R +LK+   +L+ P G  +I RTAG  R+  E++ D  YL +LW  I            I
Sbjct: 338 RKKLKDIAVELDVPTGAGLIVRTAGAKRTKSEIKRDYEYLQRLWEQIRELTLKSIAPAKI 397

Query: 207 YQESSLVIRAIRDYFNHDIGDILIDTDDIYDQAQQFMAHVMPEHAARVKRYRDDAALFSR 266
           Y+E  L+ R+IRD ++ +I ++L++ +  Y  A+ FM  +MP HA  VK Y+D   LF+R
Sbjct: 398 YEEGDLIKRSIRDLYSREIDEVLVEGERGYRIAKDFMKMIMPSHAKNVKNYQDQLPLFAR 457

Query: 267 FQIEHQIESAYARTVQLPSGGAIVIDHTEALVSVDVNSARAIKGGDIEETATRTNLEAAD 326
           FQ+E  + + +  TVQL SGG IVI  TEALV++DVNS RA K G IEETA +TNLEAA+
Sbjct: 458 FQVESYLGAMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAE 517

Query: 327 EVARQMRLRDLGGLIVIDFIDMDESKNRREVESRLRDALRQDRARVQFGSISKFGLMEMS 386
           EVARQ+RLRDL GLIVIDFIDMDE KN   VE R++D L+ DRAR+Q G IS FGLMEMS
Sbjct: 518 EVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLMEMS 577

Query: 387 RQRLKPALSEGSSIPCPRCGGSGHIRDTESSALQILRIIQEESMKDNTAAVHVQVPVEVA 446
           RQRL+P + E ++ PCP C G+G IR  +S AL ILR I+EE  +  +  V V+ PV +A
Sbjct: 578 RQRLRPGMIEATTAPCPHCHGTGLIRSDDSLALSILRQIEEEGTRRRSREVLVRCPVSIA 637

Query: 447 SFLLNEKRPEIAKIELKQRVTVLMVPNKTLETPNYKLERLK 487
           ++L+N+KR  IA+IE +  ++V +  +  L +P++ LE+ K
Sbjct: 638 NYLMNQKREHIAQIETRYGLSVRIEGDPHLVSPDFSLEKFK 678



 Score = 98.2 bits (243), Expect = 3e-24
 Identities = 51/119 (42%), Positives = 73/119 (61%), Gaps = 8/119 (6%)

Query: 2   KRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDYG 61
           K+MLI+AT AEE R+ +VDG K+ +++ E E + Q  GNIY A VTRVEPSL+A FVDYG
Sbjct: 3   KKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVDYG 62

Query: 62  EDRHGFLPFKEISKQYFAEGVSASQARIQD--------AIREGQELTVQVEKEERGNKG 112
            +RHGFL F EI   Y+   V+  +A +++          R+ +E      ++ R  +G
Sbjct: 63  GNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAQRARDDEEDAKPARRQSRSRRG 121