Pairwise Alignments

Query, 251 a.a., Response regulator receiver:LytTr DNA-binding region from Variovorax sp. SCN45

Subject, 261 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  109 bits (273), Expect = 5e-29
 Identities = 82/265 (30%), Positives = 132/265 (49%), Gaps = 27/265 (10%)

Query: 1   MNMSTLKTLIVDDEALARSRLRTLLRDCNSPGAEVVAEAAQGAEAQQQLATLALDLVLLD 60
           M   T   ++ DDE L R  L  LL +   P  E+VA A  G  A Q +     D+V LD
Sbjct: 1   MMNQTYTAVLADDEPLLRHHLNKLLAEL-WPALEIVASAENGQIALQAIEQHQPDVVFLD 59

Query: 61  VHMPGIDGIEVARALRSRADAPAVVFVTAHAAHAVTAFDLDAVDYLTKPVRAERLQQALQ 120
           + MP +DGIEVAR L  +   P VVF+TA+  +AV+AF+  A+DYL KP+ + RL    +
Sbjct: 60  IRMPKMDGIEVARRLLQQPKVPLVVFITAYDEYAVSAFETHAIDYLLKPLSSSRLASCCE 119

Query: 121 KAERFLKERRA--------------LQAEAAPETVLIQDRGRAERVPL---SEVLYLKSE 163
           K ++ L+   A              L     P+  +     + E + L   +E+LY+K+E
Sbjct: 120 KLQQQLRRNVAPSNDLAQLMSQFEQLTRTVKPQYQVWLKASKGEEIHLIAVNELLYVKAE 179

Query: 164 YKYLTV----RTATRSHILDGSLNE-FEERYPHRFLRVHRNALVARAAIRALEKYDDGED 218
            KYL++       T  ++L  SL E   +  P++F ++HR+ +V    +  ++K      
Sbjct: 180 DKYLSLYKVHGATTHEYLLRSSLKELLAQLDPNQFWQIHRSIVV---NVGKIDKVTRDFG 236

Query: 219 AEGWALRLDAIPEPVAVSRRQLAAV 243
            + W + +D +  PV+ + + L  V
Sbjct: 237 GKMW-VHIDRLQLPVSRALQHLFKV 260