Pairwise Alignments

Query, 414 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 389 a.a., RND efflux system, membrane fusion protein CmeA from Pseudomonas fluorescens FW300-N2E2

 Score =  288 bits (737), Expect = 2e-82
 Identities = 149/352 (42%), Positives = 230/352 (65%)

Query: 32  SGTSKAAAAPGKEVGTVTLKHETLAQSTELPGRTAAPVIAEIRPQVGGILKERLFTEGSQ 91
           S +   A++P   V   T++   L+ S EL GR AAP +AE+R +V G++ +++F EG  
Sbjct: 23  SASPPDASSPLASVRIETVQARPLSISNELSGRIAAPRVAEVRARVAGVVLQQVFREGRD 82

Query: 92  VKAGQVLYQLDPAPLQAAHASAQASVRKAESALATARTVARRNAELVKIDAISRQVFDES 151
           VK G++L+++DPAP +A   SA+A++RKAE+    AR  A+R A+L+   AIS Q +D +
Sbjct: 83  VKQGELLFRIDPAPFKADLDSAEAALRKAEANAFQARLQAQRYAQLIDDKAISGQDYDNA 142

Query: 152 QAAEQQAEADLGVARAAEQTARIQLGYTRITSPIAGWAELSTVTPGALVTANQAAALTTV 211
           +A+ +Q  AD+  ++AA + A++ LGY  +T+PI+G    + VT GALV  N++  L  +
Sbjct: 143 RASVRQTAADVAASKAAVERAKLNLGYATVTAPISGRIGRALVTEGALVGQNESTPLALI 202

Query: 212 QQLDPIHVHVTQSSRELLRLKRELASGRLQRASDAEARIQLVLEDGSKYPHAGRLTFSGV 271
           QQLDPIH  +TQS+REL  L+R   +G LQ     +A+  L+ +DGS YP  G+L F+ +
Sbjct: 203 QQLDPIHADLTQSTRELNDLRRAFRAGLLQAVGQGQAKATLIQDDGSPYPLPGKLLFTDL 262

Query: 272 TVDAGTGSVTLRAVVPNPDKLLMPGMYVRAVLQEGTDATALLVPQQAVTRAPDGSASALV 331
           +VD  TG +TLR+  PNPD  L+PG ++R  L++  ++  + VPQ+AV R   G A  L+
Sbjct: 263 SVDPSTGQITLRSEFPNPDLDLLPGSFIRVRLEQAVNSQGITVPQRAVLRDSAGVAQVLM 322

Query: 332 VDAENKVAKRPIQVGRAVGTRWQVLEGLAAGDRVMTEGSQRVKVGEKVKVVD 383
           +DAE KV+++P+Q+G A   RW V +GL  GDR++ EG Q  + GE+V+V D
Sbjct: 323 LDAEQKVSQQPVQLGAAQNDRWVVTQGLKPGDRIVIEGLQHARPGEQVQVDD 374