Pairwise Alignments

Query, 197 a.a., RNA polymerase sigma factor from Variovorax sp. SCN45

Subject, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

 Score = 87.4 bits (215), Expect = 1e-22
 Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 16/196 (8%)

Query: 7   MTAPSPDA----ELMALIDRIGHRDEAALRLLYDRTSPKLMGLAMRVVRQREWAEDVLQE 62
           M  PSP      E +  ++++  RD  A  L++   SPKL    M+ V   + A +++QE
Sbjct: 1   MFNPSPHTFGRQEWLECMEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQE 60

Query: 63  AFLTVWRVAGDYRSSLSPPLAWLGLIVRSRALDLLRRRTADRAQLTQEFDELMADTLESD 122
              TVW+ A  +    S    W+  I R+ + DLLRR+    A        ++AD +  +
Sbjct: 61  TMSTVWQKASLFDGQKSSLATWIYTIARNLSYDLLRRQKGRDAY-------VLADDIWPE 113

Query: 123 APNPADTAD--ASEQAWALHQC---LSQLEGRQREVVSLAYLREMSHGELADQLKLPLGT 177
              P D  D  A EQ     Q    L +L   Q++V+   YL E+   ++AD L +PLGT
Sbjct: 114 DYCPPDLVDHYAPEQDLLKEQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGT 173

Query: 178 VKTWIRRGLEKLRVCM 193
           VK+ +R  +EKLR+ M
Sbjct: 174 VKSRLRLAVEKLRLSM 189