Pairwise Alignments

Query, 197 a.a., RNA polymerase sigma factor from Variovorax sp. SCN45

Subject, 196 a.a., RNA polymerase sigma factor from Synechococcus elongatus PCC 7942

 Score = 88.6 bits (218), Expect = 7e-23
 Identities = 61/188 (32%), Positives = 102/188 (54%), Gaps = 7/188 (3%)

Query: 4   NPWMTAPSPDAELMALIDRIGHRDEAALRLLYDRTSPKLMGLAMRVVRQREWAEDVLQEA 63
           +P  T+ S D +L + + +      AAL  LYDR +  + G+AM+V+   + AED+ Q+ 
Sbjct: 7   SPTGTSNSDDQDLWSELQQ---GQVAALARLYDRHAGLVYGIAMQVLGNPQEAEDLTQDI 63

Query: 64  FLT-VWRVAGDYRSSLSPPLAWLGLIVRSRALDLLRRRTADRAQLTQEFDELMADTLESD 122
           F+  V R    Y S       +L ++ RSRA+D LR R    + + +  +++  +  E  
Sbjct: 64  FIRLVDRQHSHYDSKRGSLRTYLAVLTRSRAIDRLRSRRTQASAIERVQNQVKQEATEDP 123

Query: 123 APNPADTADASEQAWALHQCLSQLEGRQREVVSLAYLREMSHGELADQLKLPLGTVKTWI 182
              P  +  A+E +  + + L+QL   Q++V+ LAY   +S  ++A++L  PLGT+K   
Sbjct: 124 ---PIASLGAAETSAEVQKALAQLPESQQQVLRLAYYEGLSQSDIAERLSEPLGTIKARA 180

Query: 183 RRGLEKLR 190
           RRGL KLR
Sbjct: 181 RRGLLKLR 188