Pairwise Alignments

Query, 197 a.a., RNA polymerase sigma factor from Variovorax sp. SCN45

Subject, 212 a.a., RNA polymerase sigma factor (RefSeq) from Shewanella loihica PV-4

 Score = 70.1 bits (170), Expect = 3e-17
 Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 4/183 (2%)

Query: 14  AELMALIDRIGH-RDEAALRLLYDRTSPKLMGLAMRVVRQREWAEDVLQEAFLTVWRVAG 72
           AEL   + R+   RD+ A   L+   +PK+    ++ +     A +++QE    VWR A 
Sbjct: 27  AELSTWLVRVADARDKQAFTRLFQFFAPKIKRFGIKQLGNEAQAHELVQETMSNVWRKAH 86

Query: 73  DYRSSLSPPLAWLGLIVRSRALDLLRR-RTADRAQLTQEFDELMADTLESDAPNPADTAD 131
            Y         W+  ++R+ A D+LRR +      L  +   L    ++S+   P   AD
Sbjct: 87  LYDGDKGAATTWVYTVMRNAAFDMLRRVKAKAEMNLGDDIWPLEQAQVQSE-EEPLHFAD 145

Query: 132 ASEQAWALHQCLSQLEGRQREVVSLAYLREMSHGELADQLKLPLGTVKTWIRRGLEKLRV 191
              +   L   +  L   QR VV   Y +E+S  +LA Q  +P+GT+K+ +R  L KL+ 
Sbjct: 146 HLMEKQML-AYVDSLPEAQRAVVKGVYYQELSQEQLAQQFGVPIGTIKSRLRLALAKLKQ 204

Query: 192 CMG 194
            MG
Sbjct: 205 QMG 207