Pairwise Alignments

Query, 243 a.a., INTEGRAL MEMBRANE PROTEIN (Rhomboid family) from Variovorax sp. SCN45

Subject, 237 a.a., Predicted membrane protein/domain from Pseudomonas stutzeri RCH2

 Score =  166 bits (421), Expect = 3e-46
 Identities = 99/228 (43%), Positives = 133/228 (58%), Gaps = 5/228 (2%)

Query: 3   LDTLYTAETPEGIALSLRPAGLVARGLAYLIDFAIRLGIFVGISIAVGMLGKMGFGILLV 62
           LDT    ETPEGI L L PAGLV R LA+ ID  IR  I + + + +G+LGK G G+  +
Sbjct: 13  LDTNLRVETPEGIDLLLHPAGLVPRALAFAIDLVIRAAILLALFLTLGLLGKFGMGLGTL 72

Query: 63  AYFCLEWFYPVVFELTRAAATPGKRVMGLRVVMDSGLPVTPAASLTRNLLRAADFVPSFY 122
             F ++W+Y V+FE+     TPGK  +GLRVV D G PV  ++SLTRNLLR  D +P  Y
Sbjct: 73  LLFLVQWWYMVLFEVLNQGRTPGKYWLGLRVVHDDGTPVGWSSSLTRNLLRFVDMLPFGY 132

Query: 123 GAGIVSMLWRRDSKRLGDLAAGTLVVFSDQVSLHGGVPAAEPQAPARPLSAREQMAVVSW 182
             G +S L     KRLGDLAAGTLV++ ++      +P AEP A    L+  EQ A++ +
Sbjct: 133 FLGALSCLGHPAFKRLGDLAAGTLVIYQEKPQPRPTLPDAEPVAAPIALTLDEQRALIGF 192

Query: 183 AGRATRLTPERFDELARIAQPVLGPDTSAGGGASASQRLLGVAQWVLG 230
           A R   L+ ER  ELA I    LG         +A   + G+A+ ++G
Sbjct: 193 AERQGALSAERRLELASILAEPLGTTDE-----NAEATIHGIARTMVG 235