Pairwise Alignments

Query, 339 a.a., Hydroxymethylpyrimidine ABC transporter, substrate-binding component from Variovorax sp. SCN45

Subject, 333 a.a., ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components from Pseudomonas stutzeri RCH2

 Score = 50.4 bits (119), Expect = 6e-11
 Identities = 55/251 (21%), Positives = 97/251 (38%), Gaps = 8/251 (3%)

Query: 18  GIAAAALFGAAGPAAAQEKITYNMAWLPQGSSVGVIVAKEQGFFRELGLDATIVRGYGGN 77
           G+A A LF      AA++     + W   G      VA ++  F+  GLD  +       
Sbjct: 15  GLAVATLFSPLASQAAEKLKIGTVVWAGYGP---FYVADKKDLFKPHGLDVDLQFFNDPA 71

Query: 78  RTANELDQGQFEFGYVDPISLVLNRANGGKIRMVGALNTRWPAGICFDTKRHQPKTPADM 137
                +     + G +    +V + A G K R+V  ++              Q  T  D 
Sbjct: 72  LIPTAMLSRALDGGMLTYDQVVASVAKGLKHRVVMPIDFSNGGDAIVADASIQSVT--DF 129

Query: 138 KGLVLGGGSASPVHNVVPAWLEQNGQPKDSIRLLRMDPAVVDASLIEGRIDLAECWRASN 197
           +G  +G    SP   ++   L+QNG     I  + M P  +  ++  G + +   +  + 
Sbjct: 130 RGKKVGFNPLSPSDFLLAYALQQNGMSDKDINAVNMTPEGIPGAMASGNLPIGVTYEPN- 188

Query: 198 RAVTQKQANAAGVKLGWIEYSDFGLDAYGSGFATSEDVIGKRPDVVKKFLRASYRGYAYA 257
             V+Q  +   G K   +  S              E VI K+P  +K  ++    G AY 
Sbjct: 189 --VSQILSMGGGGKFKVVYSSKDAPGLITDVLVFDEAVIAKKPAAIKAMIQGYLDGLAYM 246

Query: 258 LANPEKAADLM 268
            A+PE++A+++
Sbjct: 247 QAHPEESAEII 257