Pairwise Alignments

Query, 255 a.a., Hydroxymethylpyrimidine ABC transporter, transmembrane component from Variovorax sp. SCN45

Subject, 281 a.a., aliphatic sulfonate ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  108 bits (270), Expect = 1e-28
 Identities = 65/237 (27%), Positives = 119/237 (50%), Gaps = 5/237 (2%)

Query: 20  LFIVLAVLWEKSVDVFGIKRYLLPPLSQVLDSLWSNRM--ALLAQSWVTTQEVLAGFALA 77
           L I    LW+ +     I   + P +  +L +LW+     ALL    ++ Q     F  A
Sbjct: 41  LLIAFLALWQAASTAGWINPAVFPSVGAILSALWTGISGGALLDDIAISLQRSGTAFVGA 100

Query: 78  AIGGVLLGLAIHAVPVVRRMLYPLIVVFQGLPKIALAPLMVIWFGYGDTSKILMAFLFAF 137
            +  + LGL +  V  +   L P++ +F+    +AL P+ ++  G G+ SK+ + F    
Sbjct: 101 VVLAIPLGLLMGQVRAIENALDPVLQLFRQTSALALYPVFILLLGLGEASKVFVIFWATL 160

Query: 138 FPVVIATMGGLAGTPAHLVEHFRAIRAPAWTTFRRLYVPSALPSIMDGCKSAMPLAVIGA 197
           FP++++T+ G+    + L+E  R   A   T FRR+ +P A+PSI  G + +   A++  
Sbjct: 161 FPLLLSTISGVKEVDSKLIEMARVYGASRLTVFRRVVLPGAVPSIFVGLRLSATTALLLL 220

Query: 198 IVGEFVGSERGLGHLILEANANARTDYLFAALVVISAVAGLL--YVLVELAAKRVWW 252
           I  E +G+ +G+G  ++ A  N +   +FAA+ +++ + GL+  Y LV    +   W
Sbjct: 221 IASEMIGANKGIGFQVMNAQYNFQIPLMFAAIFILAGL-GLVSNYALVFAQRRLCRW 276