Pairwise Alignments

Query, 347 a.a., Twitching motility protein PilT from Variovorax sp. SCN45

Subject, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

 Score =  133 bits (334), Expect = 1e-35
 Identities = 99/280 (35%), Positives = 147/280 (52%), Gaps = 22/280 (7%)

Query: 3   ITQLLAFSVKNKASDLHLSA---GLPPMIRVNGDVRRINVDALDHKGVHAMVYDIMSDTH 59
           I  +L  ++K  ASD+H+      L    RV+G +R +   +     +      +M+   
Sbjct: 127 INAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSRVKVMAKLD 186

Query: 60  RKHYEEFLEVDFSFEIDGLA-RFRVNAFNQARGAAAVFRTIPSKILTLEQLNAPKI---- 114
                   +   S  I G A   RV+    + G   V R +      L+  +        
Sbjct: 187 IAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGMTAHNH 246

Query: 115 --FGELALKPRGLVLVTGPTGSGKSTTLAAMVNYLNENEYGHILTVEDPIEFVHESKKCL 172
             F  L  +P G++LVTGPTGSGKSTTL A +  LN +E  +ILTVEDPIEF  +     
Sbjct: 247 DNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSER-NILTVEDPIEFDIDG---- 301

Query: 173 INQREVGP-MTLSFSNALRSALREDPDAILVGELRDLETIRLAMTAAETGHLVFGTLHTS 231
           I Q +V P + ++F+  LR+ LR+DPD ++VGE+RDLET ++A+ A+ TGHLV  TLHT+
Sbjct: 302 IGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTN 361

Query: 232 SAAKTIDRIIDVFPGEEKEMIRAMLSESLQAVISQTLCKT 271
           +A   + R+ D+  G E  +I    S SL  V++Q L +T
Sbjct: 362 TAVGAVTRLRDM--GIEPFLI----SSSLLGVLAQRLVRT 395