Pairwise Alignments

Query, 347 a.a., Twitching motility protein PilT from Variovorax sp. SCN45

Subject, 521 a.a., type II secretion system protein E (GspE) (RefSeq) from Shewanella sp. ANA-3

 Score =  130 bits (326), Expect = 1e-34
 Identities = 96/280 (34%), Positives = 150/280 (53%), Gaps = 22/280 (7%)

Query: 3   ITQLLAFSVKNKASDLHLSAGLPPMI---RVNGDVRRINVDALDHKGVHAMVYDIMSDTH 59
           I  LL+ ++K +ASD+H+      ++   R++G ++ +         +      +M+   
Sbjct: 145 INALLSEAIKEEASDIHIETYEKQLVVRFRIDGVLKEVLKPNRKLSSLLVSRIKVMARLD 204

Query: 60  RKHYEEFLEVDFSFEIDGLA-RFRVNAFNQARGAAAVFRTIPSKI--LTLEQLNAPKI-- 114
                   +   S  I G A   RV+    + G   V R +      L L+QL       
Sbjct: 205 IAEKRVPQDGRISLRIAGRAVDVRVSTMPSSHGERVVLRLLDKNAGNLDLKQLGMTDSIR 264

Query: 115 --FGELALKPRGLVLVTGPTGSGKSTTLAAMVNYLNENEYGHILTVEDPIEFVHESKKCL 172
             F E+  +P G++LVTGPTGSGKSTTL A +  +N  +  +ILTVEDPIE+  E     
Sbjct: 265 AQFDEIIRRPHGIILVTGPTGSGKSTTLYAGLTEINSKDT-NILTVEDPIEYELEG---- 319

Query: 173 INQREVGPMT-LSFSNALRSALREDPDAILVGELRDLETIRLAMTAAETGHLVFGTLHTS 231
           I Q +V     ++F+  LR+ LR+DPD +++GE+RDLET ++A+ A+ TGHLV  TLHT+
Sbjct: 320 IGQTQVNTKADMTFARGLRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHLVISTLHTN 379

Query: 232 SAAKTIDRIIDVFPGEEKEMIRAMLSESLQAVISQTLCKT 271
           +A+  I R+ D+  G E  ++    S SL  V++Q L +T
Sbjct: 380 TASGAITRLQDM--GVEPFLV----SSSLLGVLAQRLIRT 413