Pairwise Alignments

Query, 315 a.a., 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) from Variovorax sp. SCN45

Subject, 224 a.a., methyltransferase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  142 bits (358), Expect = 7e-39
 Identities = 93/232 (40%), Positives = 133/232 (57%), Gaps = 16/232 (6%)

Query: 28  GTLYVVATPIGNLADITLRALHVLQLVDAIACEDTRHTQSLLRAYGIDRPGARLLAVHQH 87
           G LYVV TP+GNL D+T RA+ VL+ VD I  EDTR +  LL+ + I      + + H+ 
Sbjct: 2   GKLYVVPTPVGNLEDMTFRAIRVLKEVDLILAEDTRTSGILLKHFEIKNA---MQSHHKF 58

Query: 88  NEAEAAQTVVARLAQGERIAYVSDAGTPGVSDPGARLAAAVRAAGQRVLPLPGASSVTTL 147
           NE +  ++VV R+  GE +A +SDAGTPG+SDPG  +       G  V  LPGA++    
Sbjct: 59  NEHKTVESVVNRIKAGETVALISDAGTPGISDPGFLVVRECVRNGIEVQCLPGATAFVPA 118

Query: 148 VGAAGLVADGGDGNASSAFVFAGFLPSKAGERDTAVQALSQEPRAVVLLEAPHR-IESLA 206
           + A+GL         +  F F GFLP K G R T ++AL++E R +V  E+PHR +++L 
Sbjct: 119 LVASGL--------PNEKFCFEGFLPQKKG-RQTRLKALAEEHRTMVFYESPHRLLKTLT 169

Query: 207 RALATLG-ERRITVGRELTKQFEEIATVAASALPDWFGADRDRTRGEFALVL 257
           +     G ER+ TV RE++K  EE    + + L + F A     RGE  +VL
Sbjct: 170 QFAEYFGTERQATVSREISKLHEETVRGSLAELIEHFTA--TEPRGEIVIVL 219