Pairwise Alignments

Query, 475 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

Subject, 468 a.a., RND efflux system, outer membrane lipoprotein, NodT from Pseudomonas syringae pv. syringae B728a

 Score =  397 bits (1021), Expect = e-115
 Identities = 216/468 (46%), Positives = 308/468 (65%), Gaps = 7/468 (1%)

Query: 4   KLIPTALAAAMLLAGC-SLIPTYERPAAPVPTTF-PGDPAQPA--GQAAANLAWQDFFTD 59
           +L   +LA   LLAGC +L P Y+RP APV + + PG   QPA  G    ++ WQ+FF D
Sbjct: 2   RLFWPSLAVTALLAGCVNLAPDYQRPEAPVSSQWLPGTAGQPAASGSVPTDIEWQNFFID 61

Query: 60  PRLAGLIQTALANNRDLRVSVLNIEQARAQFQIQRSALFPALGVTGTGSRSGPNPYQGIE 119
            RL  L   AL NNRDLR++ LN+E+A+AQ++I+R+A  P +  +G+G+ +   P     
Sbjct: 62  NRLVRLQTLALVNNRDLRLASLNVEKAQAQYRIERAASLPTIDASGSGTHTR-TPSSTSM 120

Query: 120 PGMGSVASQYSVNFGFTAWELDFFGRIRALKDQALAQYLATDETRKAVQISLIASVANGW 179
            G  S++ +YS   G +++ELD FGRI+ L+D+AL  YLA  ETR++ QISLIA VA GW
Sbjct: 121 TGKPSISHEYSAQLGLSSYELDVFGRIQNLQDEALEDYLALTETRRSTQISLIAEVATGW 180

Query: 180 LTLLADDELLEITRQTMVTREESVRLTKLRFDNGVSSELDYQAANGQFESARAAYAQQLR 239
           LTL AD++LL++   T+ ++++S  LT+     G SS L+   A    ESAR   AQ   
Sbjct: 181 LTLAADNQLLKLAEDTLASQQKSYDLTRSSHALGGSSGLEVAQAQTTVESARGDVAQYKS 240

Query: 240 ARAEDENALALLLGAPVPAEATAGGAKGLNGIKPMPDVPAGLPSDLLAERPDIRSAEQQL 299
              +D NAL LL+G+ +P E           +  +  VP GLPS LL  RPD+ SAE  L
Sbjct: 241 QILQDRNALRLLVGSDLPEELLPNA--DTQSVAQLVQVPDGLPSSLLQRRPDVLSAEHTL 298

Query: 300 IAANANIGAARANFFPRVSLTSSIGTASTEFSGLFDRGSKAWSFAPTVTLPIFNAGSNRA 359
            AAN +IGAARA FFP ++LT+S G++ST  SGLF  G+ AWSFAP++++PIF+ G+NRA
Sbjct: 299 KAANIDIGAARAAFFPSITLTASAGSSSTSLSGLFKSGTGAWSFAPSISVPIFDGGANRA 358

Query: 360 TLESAKAGREIAVAQYEKSIQTAFREVADALAGRATLGEQVRALRAQADSEAVRFKLSDL 419
           TL+SAK   +I +  Y+++IQTAF+EVADALA R+TL E++ A +A  D+    ++L+D 
Sbjct: 359 TLDSAKVENQIQIQTYQQTIQTAFKEVADALAVRSTLDERLAAQQAYTDASRRSYELADA 418

Query: 420 RYRNGIASALDLLDAQRSLFAAQQSAVTTQLLQLQNQVTLYKTLGGGW 467
            YR G  S L+ L++QRSL++A+Q  ++ +L +  N+VTLYK +GGGW
Sbjct: 419 LYRGGSQSYLEALESQRSLYSAEQDLISLRLTEQSNRVTLYKVMGGGW 466