Pairwise Alignments

Query, 253 a.a., 23S rRNA (uridine(2552)-2'-O)-methyltransferase (EC 2.1.1.166) from Variovorax sp. SCN45

Subject, 258 a.a., RlmE family RNA methyltransferase from Methanococcus maripaludis S2

 Score =  123 bits (309), Expect = 3e-33
 Identities = 69/207 (33%), Positives = 112/207 (54%), Gaps = 11/207 (5%)

Query: 40  KVNKAWLHDHINDPYVKLATKEGYRARAAYKLKEIDESLGLVKPGQLVVDLGSTPGAWSQ 99
           K +K W+    ND Y  LA +  YR+RA YKL +++E   L+K   +VVDLG  PG W Q
Sbjct: 3   KKDKRWVLQRKNDHYYNLAKRRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQ 62

Query: 100 YLRRRMSPDGAAAGELNGTIIALDILPMEPI--EGVTFLQGDFREDALLQQLLGVLAGRK 157
             R  +  D        G I+ +D+  ++P+  + +  ++GD  ++ +L+Q   +L   K
Sbjct: 63  AARDIVGED--------GFIVGIDLQTVKPLPHDNIIAIKGDMTKEEILKQAKDLLP-EK 113

Query: 158 ADLVVSDMAPNLSGIHSADAARVAHLIELAIDFAQHHLKPEGALVAKLFHGSGYDDLVKL 217
            D+++ D +PN+SG+   D  R   L  +A+  A   LK  G  V K+F G  ++  V+L
Sbjct: 114 PDVIICDASPNISGVWDVDHVRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQL 173

Query: 218 FKANFRIVKPFKPKASRDKSSETFLVG 244
               F      KP+ASRD+S+E +++G
Sbjct: 174 VSEYFDKAFTTKPRASRDESAEVYVIG 200