Pairwise Alignments

Query, 253 a.a., 23S rRNA (uridine(2552)-2'-O)-methyltransferase (EC 2.1.1.166) from Variovorax sp. SCN45

Subject, 204 a.a., ribosomal RNA large subunit methyltransferase J (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  116 bits (290), Expect = 4e-31
 Identities = 73/204 (35%), Positives = 106/204 (51%), Gaps = 13/204 (6%)

Query: 52  DPYVKLATKEGYRARAAYKLKEIDESLGLVKPGQLVVDLGSTPGAWSQYLRRRMSPDGAA 111
           D Y   A +E Y AR+ YKLKEID    + + G  V+DLG+ PG+WS     ++ P    
Sbjct: 6   DHYFLKAKQENYPARSVYKLKEIDNRFKIFRQGMKVLDLGAAPGSWSLGAAEKVGP---- 61

Query: 112 AGELNGTIIALDILPMEPI--EGVTFLQGD-FREDALLQQLLGVLAGRKADLVVSDMAPN 168
                G ++A D+   + +  + VTF+Q + F      + LL  +A    D+V+SDMAP 
Sbjct: 62  ----RGRVLACDLQETDTVFPDNVTFMQENVFERSEAFENLLDEIA--PFDVVISDMAPR 115

Query: 169 LSGIHSADAARVAHLIELAIDFAQHHLKPEGALVAKLFHGSGYDDLVKLFKANFRIVKPF 228
            +G    D AR   L   A+  A   L   G+ V K+F G    +LV+  +  F  VK F
Sbjct: 116 TTGTRFTDQARSLELCLEALAVADRCLIKGGSFVVKIFMGPDVQELVQAMRQRFSAVKSF 175

Query: 229 KPKASRDKSSETFLVGVGLKASDT 252
           KPK+SR +S ETF V +G +  +T
Sbjct: 176 KPKSSRAESKETFYVCLGYRGVET 199