Pairwise Alignments

Query, 918 a.a., ATP-dependent, 3'-5' DNA helicase with strand annealing activity from Variovorax sp. SCN45

Subject, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

 Score = 50.1 bits (118), Expect = 4e-10
 Identities = 92/380 (24%), Positives = 147/380 (38%), Gaps = 34/380 (8%)

Query: 66  KPFKFQRDVWKAIAQGRSGLLHATTGAGKTYAVWLGALQAFSLPR---KETARPAPPPLT 122
           +P   Q+    A+ QGR  ++ A TG GKT    L  L+    P     ++ R  P    
Sbjct: 23  QPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERL-FPNGHPDKSQRHGPRQPR 81

Query: 123 VLWLTPMRALAA---DTLRALQQPLEALGAEVHPWSTGARSGDTSSAERSAQNQRLPSVL 179
           VL LTP R LAA   ++ +   + L+ + A +         G      +     R   VL
Sbjct: 82  VLVLTPTRELAAQVHESFKVYARDLKFVSACIF--------GGVGMNPQVQAMSRGVDVL 133

Query: 180 VTTPESLSLLLARADANEVLGSVRLAVVDEWHELLGNKRGVQVQLALARLRRWNPGMTVW 239
           V  P  L  L  +   +  L  V + V+DE   +L       V+  LARL      +   
Sbjct: 134 VACPGRLLDLAGQGSVD--LSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLL-- 189

Query: 240 GMSATLG-NLKEAMHALLGHEEGVLVQGQVPKKLVIDSLLPGRAERFPWGGHLGLTMLPQ 298
             SAT   ++ +    LL + E + V    P    ++ +   R  R P      L  L  
Sbjct: 190 -FSATFSKDITDLAGKLLHNPERIEV---TPPNTTVERI-EQRVFRLPASHKRAL--LAH 242

Query: 299 VIEEIAASKTTLVFTNTRSQSEIWYQALLEARPEWAGSIALHHGSLDREVREWVELGLKS 358
           +I    A +  LVFT T+  +      L E   +        HG+  +  R       K+
Sbjct: 243 LITA-GAWEQVLVFTRTKHGAN----RLAEYLDKHGLPAVAIHGNKSQNARTKALADFKA 297

Query: 359 GELKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLLQRAGRSGHAPGRPSRITLVPTHS 418
           GE++ +V T     G+D   +  V+    P      + R GR+G A      I+LV    
Sbjct: 298 GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 419 IEMVEG--AAARAAIAEGHI 436
            ++++      +  IA+G +
Sbjct: 358 EKLLKSIERMTKQKIADGDL 377