Pairwise Alignments

Query, 918 a.a., ATP-dependent, 3'-5' DNA helicase with strand annealing activity from Variovorax sp. SCN45

Subject, 1475 a.a., Lhr-like helicases from Pseudomonas stutzeri RCH2

 Score =  235 bits (599), Expect = 2e-65
 Identities = 264/908 (29%), Positives = 380/908 (41%), Gaps = 122/908 (13%)

Query: 20  GGGRRRIEDPLSTEGRLPPSQPSPSGGRSKTKVKAALDAWFAERGWKPFKFQRDVWKAIA 79
           GG    I+  +S+ G L    P+ +G             WF+     P   Q   W  I 
Sbjct: 16  GGATIFIDMSISSAGPLGRFHPAVAG-------------WFSRSFPAPTPAQAAAWPLIR 62

Query: 80  QGRSGLLHATTGAGKTYAVWLGALQAFSLPRKETARPAPPPLT-VLWLTPMRALAADTLR 138
            GRS L+ A TG+GKT   +L A+    L ++  A       T VL+++P++AL+ D   
Sbjct: 63  AGRSTLVAAPTGSGKTLTAFLAAIDG--LVQQGLAEGGLADATRVLYVSPLKALSNDIHI 120

Query: 139 ALQQPLEALGAEVHPWS-------TGARSGDTSSAERSAQNQRLPSVLVTTPESLSLLLA 191
            L++PL  + AE+           T  R+GDT  AER+A  +R+P +LVTTPESL +LL+
Sbjct: 121 NLEEPLAGITAELARLGLPPLEIRTAVRTGDTPQAERNAMRKRVPHILVTTPESLYVLLS 180

Query: 192 RADANEVLGSVRLAVVDEWHELLGNKRGVQVQLALARLRRW-NPGMTVWGMSATLGNLKE 250
            A   E+L  V+  +VDE H + GNKRG  + L+L RL    N  +   G+SAT   +  
Sbjct: 181 SASGREMLADVQSVIVDEIHAIAGNKRGSHLALSLERLEALCNRPLVRVGLSATQKPIDA 240

Query: 251 AMHALLGHEEGVLVQGQVPKKLVIDSLLPGRAERF-------PWGGHLGLTMLPQVIEEI 303
               L G E         P ++V   +  GRA          P    +       V + +
Sbjct: 241 VARFLAGVER--------PCEIV--DIGHGRARDLALEVPSVPLEAVMSNDAWALVYDRL 290

Query: 304 AA----SKTTLVFTNTRSQSEIWYQALLEARPEWAGSIALHHGSLDREVREWVELGLKSG 359
           AA     +TTLVF NTR  +E   + L E     A  +A HHGSL RE R   E  LK G
Sbjct: 291 AALAGEHRTTLVFVNTRRMAERTTRHLAERLG--AEVVAAHHGSLAREQRLSAEQKLKRG 348

Query: 360 ELKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLLQRAGRSGHAPGRPSRITLVPTHSI 419
           EL+ +V T+SL+LG+D   VE V Q+GSP+ ++  LQR GR+GH     S+  L P    
Sbjct: 349 ELRVLVATASLELGIDIGDVELVCQLGSPRSISAFLQRVGRAGHQVAGVSKGRLFPGSRD 408

Query: 420 EMVEGAAARAAIAEGHIEARHSPDQPLDVLVQHLVTVALGGGFLPDDLYAEVRGTAAYEN 479
           +++E AA   A+  G ++    P  PLDVL Q +V       +    L   +R    Y  
Sbjct: 409 DLIECAALFDAVRRGELDTLKIPQAPLDVLAQQIVAEVACREWEEGALLQLLRRAMPYAA 468

Query: 480 LSRESWQWCLDFVSQGGPSLSAYPDYRRAVPDAEGVWRVPDARLARR--HRMNIGTIVSD 537
           L   ++Q  L  +++G    +     R A    +   R    R   R     + GTI  +
Sbjct: 469 LDEATFQALLRMLAEG---YTTRHGTRGAYLHRDLATRSLRGRRGGRLTALTSGGTIADN 525

Query: 538 ASMSVQF-VGGAKIGSVEESFVARMKPGDCFLFGGRLLELVRIHDMTAWVRRASGKRPAV 596
           A  +V     G  IG+V E F      GD F  G     +++I      V  A G  P++
Sbjct: 526 ADYAVLLEPQGLNIGTVNEDFAIESLAGDVFQLGNTSYRILKIESGRVRVEDAQGMPPSI 585

Query: 597 PRWNGGRMPLSNTLADAVVR----------QLALAGDGAYDSPEL--------------- 631
           P W G     S+ L+ AV R            A A D A  SP +               
Sbjct: 586 PFWLGEAPGRSDELSFAVARLRDEIDRRLHDAATAADDAAKSPGVVSSASSRLAPAIDWL 645

Query: 632 ------------QCVRPLLEIQQQWSALPTPHTLLAETLATREGSHLFLYPFAGRHVHLG 679
                       Q V  L   +    ALPT   L+ E      G    +      H   G
Sbjct: 646 TGSLGLSDDAARQIVEYLARARSALGALPTQQRLVMERFFDEPGGTQLVI-----HSPYG 700

Query: 680 LASLLAWRVAQHE--ARTFSIAVNDYGFELLSATEVDWPAL-LPQVLRLPEGNGEAGGAD 736
                AW +A  +   RTF+       FEL +A   D   L L      P  +       
Sbjct: 701 SRINRAWGLALRKRFCRTFN-------FELQAAATEDAIILSLSTSHSFPLADVWRYLHS 753

Query: 737 AALLHEVLASLNAGELAQRRFREIARVSGLVFQGYPGEKRSSRQLQ--ASSSLFWEVF-- 792
           A+    ++ +L    L   R+R IA  + L      G ++ + QLQ   S  L   VF  
Sbjct: 754 ASAEQVLIQALLDAPLFGVRWRWIA-TTALALPRMAGGRKVAPQLQRMKSEDLLATVFPD 812

Query: 793 ----------RKYDPDNRLLQQAEQELLAQELEIGRLRASLVRMAGQQLVLKPLARPTPF 842
                      +  PD+ L++Q   + L + ++     A L RM   ++ L  LAR  P 
Sbjct: 813 QVACLENIVGEREIPDHPLVRQTLDDCLHEAMDSEGWLALLRRMERGEIEL--LARDLPA 870

Query: 843 SFPLMVEL 850
             PL +E+
Sbjct: 871 PSPLAMEI 878