Pairwise Alignments

Query, 918 a.a., ATP-dependent, 3'-5' DNA helicase with strand annealing activity from Variovorax sp. SCN45

Subject, 863 a.a., Lhr-like helicases from Pseudomonas stutzeri RCH2

 Score = 1091 bits (2822), Expect = 0.0
 Identities = 566/865 (65%), Positives = 667/865 (77%), Gaps = 26/865 (3%)

Query: 57  DAWFAERGWKPFKFQRDVWKAIAQGRSGLLHATTGAGKTYAVWLGALQAFSL--PRKETA 114
           + WFA R W+PF FQR+VW+AI +G SGLLHATTG+GKTYAVWLGAL  F+   PR  T 
Sbjct: 10  EQWFASREWQPFPFQREVWQAIDRGESGLLHATTGSGKTYAVWLGALNRFATKAPRPNTT 69

Query: 115 RPAPPPLTVLWLTPMRALAADTLRALQQPLEALGAEVHPWSTGARSGDTSSAERSAQNQR 174
              P PLTVLW+TPMRALAADT RALQ PL  LG     WS G R+GDTS AER+ Q +R
Sbjct: 70  -DKPAPLTVLWITPMRALAADTARALQAPLYDLGIN---WSIGLRTGDTSGAERARQGRR 125

Query: 175 LPSVLVTTPESLSLLLARADANEVLGSVRLAVVDEWHELLGNKRGVQVQLALARLRRWNP 234
           LPS LVTTPESL+LLL RADA +    +R+ VVDEWHELLGNKRGVQ+QLALARLR+W P
Sbjct: 126 LPSALVTTPESLTLLLTRADARQAFAGLRMLVVDEWHELLGNKRGVQLQLALARLRQWMP 185

Query: 235 GMTVWGMSATLGNLKEAMHALLGHEEGVLVQGQVPKKLVIDSLLPGRAERFPWGGHLGLT 294
            + VWG+SATLGN   A+  LL    G LVQG+V K L +D+LLP   ERFPW GHLGL 
Sbjct: 186 ELIVWGLSATLGNQPHALDVLLYPGSGRLVQGKVDKDLRVDTLLPPCIERFPWAGHLGLR 245

Query: 295 MLPQVIEEIAASKTTLVFTNTRSQSEIWYQALLEARPEWAGSIALHHGSLDREVREWVEL 354
           MLPQV+EEI ++ TTLVFTNTRSQSEIWYQALL+ARP+WAG IALHHGSL REVR+WVE 
Sbjct: 246 MLPQVVEEIDSAATTLVFTNTRSQSEIWYQALLDARPDWAGLIALHHGSLAREVRDWVEQ 305

Query: 355 GLKSGELKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLLQRAGRSGHAPGRPSRITLV 414
           GLK G LKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARL+QRAGRSGHAPGR SR+TLV
Sbjct: 306 GLKQGALKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLMQRAGRSGHAPGRTSRVTLV 365

Query: 415 PTHSIEMVEGAAARAAIAEGHIEARHSPDQPLDVLVQHLVTVALGGGFLPDDLYAEVRGT 474
           PTHS+E+VE AAA+ AI E  IEAR +P +PLDVLVQHLV++ALGGGF PD+L+AEVR  
Sbjct: 366 PTHSVEVVEAAAAQVAIGERRIEARSAPHRPLDVLVQHLVSMALGGGFRPDELFAEVRQA 425

Query: 475 AAYENLSRESWQWCLDFVSQGGPSLSAYPDYRRAVPDAEGVWRVPDARLARRHRMNIGTI 534
            +Y +L+ + WQW L FV  GG SL+AYPDY+R  PD  G+W+VP  R+A RHRM+IGTI
Sbjct: 426 WSYRDLNEDHWQWALAFVRHGGHSLTAYPDYQRVEPDEAGLWKVPSRRVALRHRMSIGTI 485

Query: 535 VSDASMSVQF----VGGAKIGSVEESFVARMKPGDCFLFGGRLLELVRIHDMTAWVRRAS 590
           VSDAS+SV+F      G  +G++EE F+AR++PGD FLFGGRLLELVR+ +MTA+V RA+
Sbjct: 486 VSDASLSVKFWAKGGSGRSLGTIEEGFIARLRPGDNFLFGGRLLELVRVENMTAYVSRAT 545

Query: 591 GKRPAVPRWNGGRMPLSNTLADAVVRQLALAGDGAYDSPELQCVRPLLEIQQQWSALPTP 650
           G++ AVPRWNGGRMPLS+ LADAVV QL  A  G ++SPE+  V PLL +Q  WSALPT 
Sbjct: 546 GRKAAVPRWNGGRMPLSSELADAVVEQLGAASRGHFESPEMGLVEPLLRVQMDWSALPTE 605

Query: 651 HTLLAETLATREGSHLFLYPFAGRHVHLGLASLLAWRVAQHEARTFSIAVNDYGFELLSA 710
            TLLAE + +REG HLFLYPFAGRHVHLGLASLLAWR+ QH   TFSIAVNDYGFELLSA
Sbjct: 606 TTLLAEVMKSREGWHLFLYPFAGRHVHLGLASLLAWRLGQHRPLTFSIAVNDYGFELLSA 665

Query: 711 TEVDWPALLPQVLRLPEGNGEAGGADAALLHEVLASLNAGELAQRRFREIARVSGLVFQG 770
           TEVDW   L   L   E N         LLH+VLASLNAGELA+RRFREIAR++GLVF G
Sbjct: 666 TEVDWMHWLTPEL-FSEDN---------LLHDVLASLNAGELARRRFREIARIAGLVFSG 715

Query: 771 YPGEKRSSRQLQASSSLFWEVFRKYDPDNRLLQQAEQELLAQELEIGRLRASLVRMAGQQ 830
           YPG ++S+RQLQASS LF++VFR+YDP N LL QAE+E+L QELE+ RL+ +L R+  +Q
Sbjct: 716 YPGAQKSARQLQASSGLFFDVFRQYDPANLLLTQAEEEVLRQELEVERLQQTLQRLQQRQ 775

Query: 831 LVLKPLARPTPFSFPLMVELFREKLSNESVADRIARMVEQLEKAAG------GAVTAGGV 884
           L +  + R TP +FPLMVE FRE +S+E +ADRI RMV +L+KAAG       A  +  V
Sbjct: 776 LDIHQVKRTTPLAFPLMVERFRESMSSEKLADRIRRMVAELDKAAGPGGYQPQADASIAV 835

Query: 885 ERVKSTMAFGQEGAGKPPAPRRERR 909
           ER  S     +      P P++ RR
Sbjct: 836 ERDSSPKRKPRATKDGTPRPKKARR 860