Pairwise Alignments

Query, 918 a.a., ATP-dependent, 3'-5' DNA helicase with strand annealing activity from Variovorax sp. SCN45

Subject, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

 Score = 50.4 bits (119), Expect = 2e-10
 Identities = 91/365 (24%), Positives = 146/365 (40%), Gaps = 39/365 (10%)

Query: 66  KPFKFQRDVWKAIAQGRSGLLHATTGAGKTYAVWLGALQ-AFSLPRKETARPAPPPLTVL 124
           +P + Q +       GR  L  A TG GKT A  + ALQ     PR++       P  +L
Sbjct: 25  RPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRKAG-----PARIL 79

Query: 125 WLTPMRALAADTLRALQQPLEALGAEVHPWSTGARSGDTSSAERSAQNQRLPSVLVTTPE 184
            LTP R LA       Q   +     +   + G +  + +    + Q+     ++V TP 
Sbjct: 80  ILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQD-----IVVATP- 133

Query: 185 SLSLLLARADANEV-LGSVRLAVVDEWHELLGNKRGVQVQLALARLRRWNPGMTVWGMSA 243
               LL   DA      ++   ++DE   +L    G  V   L+   RW     ++  SA
Sbjct: 134 --GRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVD-RLSTECRWRKQTLLF--SA 188

Query: 244 TL-GNLKEAMHALLGHEEGVLVQGQVP----KKLVIDSLLPGRAERFPWGGHLGLTMLPQ 298
           TL G   E   A L  ++   V  + P    KK+   S    RA+  P      + +L +
Sbjct: 189 TLEGRGVEGFTADL-LKDPAHVDAEPPRRERKKI---SQWYHRADDMPHK----VELLKK 240

Query: 299 VIEEIAASKTTLVFTNTRSQSEIWYQALLEARPEWAG-SIALHHGSLDREVREWVELGLK 357
           ++ E A  + ++VF  TR +      A L A  E A    A   G + ++ R       +
Sbjct: 241 ILTEQA--ERSIVFLKTRERL-----ADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFR 293

Query: 358 SGELKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLLQRAGRSGHAPGRPSRITLVPTH 417
            G++  ++ T     G+D   +  V+    P+     L R GR+G A  +   I+LV  H
Sbjct: 294 EGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAH 353

Query: 418 SIEMV 422
              M+
Sbjct: 354 DQPMM 358