Pairwise Alignments

Query, 918 a.a., ATP-dependent, 3'-5' DNA helicase with strand annealing activity from Variovorax sp. SCN45

Subject, 849 a.a., DNA damage response helicase, ligase-associated (from data) from Sinorhizobium meliloti 1021

 Score =  432 bits (1110), Expect = e-125
 Identities = 297/868 (34%), Positives = 451/868 (51%), Gaps = 54/868 (6%)

Query: 41  PSPSGGRSKTKVKAALDAWFAERGWKPFKFQRDVWKAIAQGRSGLLHATTGAGKTYAVWL 100
           PSP G      + A    WFAE+GW+P   Q ++      G S LL A TGAGKT A +L
Sbjct: 10  PSPEG--DALTLPAPFLRWFAEKGWRPRAHQLELLSRAEAGESTLLIAPTGAGKTLAGFL 67

Query: 101 GALQAFSLPRKETARPAPP--PLTVLWLTPMRALAADTLRALQQPLEALGAEVHPWSTGA 158
            +L    + R+    P  P   +  L+++P++ALA D  R L +P+  +G    P S   
Sbjct: 68  PSL--VDITRRGRIPPGAPFTGIHTLYISPLKALAVDIERNLMKPVGEMGL---PVSIEN 122

Query: 159 RSGDTSSAERSAQNQRLPSVLVTTPESLSLLLARADANEVLGSVRLAVVDEWHELLGNKR 218
           R+GDT   +R  Q    P +L+TTPE L+LLLA  +A      +R  V+DE H L+ +KR
Sbjct: 123 RTGDTPQGKRQRQKLNPPDILLTTPEQLALLLANGEAERFFKDLRYVVLDELHSLVMSKR 182

Query: 219 GVQVQLALARLRRWNPGMTVWGMSATLGNLKEAMHALLG-------HEEGVLVQGQVPKK 271
           G  + L LARLRR  P +   G+SAT+ +  +    L+        H   + V G    +
Sbjct: 183 GHLLSLGLARLRRLAPRLQTMGLSATVADPMDLQRWLVAQFLAKENHAGLITVSGGAKPE 242

Query: 272 LVIDSLLPGRAE-RFPWGGHLGLTMLPQVIEEIAASKTTLVFTNTRSQSEIWYQALLEAR 330
           +   S+L  R E + PW GH     +P V   I   +TTL+F NTRSQ+E+ +Q L +  
Sbjct: 243 I---SIL--RTENQVPWAGHSARYAIPDVYAAIKEHRTTLLFVNTRSQAEMLFQELWKIN 297

Query: 331 PEWAGSIALHHGSLDREVREWVELGLKSGELKAVVCTSSLDLGVDFLPVERVLQIGSPKG 390
            +    IALHHGSLD   R  VE  +    L+AVV TS+LDLG+D+  V+ V+ +G+PKG
Sbjct: 298 DDDL-PIALHHGSLDVAQRRRVEAAMAENRLRAVVATSTLDLGIDWGDVDLVVHVGAPKG 356

Query: 391 VARLLQRAGRSGHAPGRPSRITLVPTHSIEMVEGAAARAAIAEGHIEARHSPD---QPLD 447
            +RL QR GR+ H    PSR  LVP +  E++E    +AA+   ++ A+ +P      LD
Sbjct: 357 ASRLAQRIGRANHRMDEPSRAILVPANRFEVME---CQAALDANYVGAQDTPSIGKGALD 413

Query: 448 VLVQHLVTVALGGGFLPDDLYAEVRGTAAYENLSRESWQWCLDFVSQGGPSLSAYPDYRR 507
           VL QH++ +A    F   +LY EV   A Y  L+ E+++  +D V+ GG +L  Y  Y R
Sbjct: 414 VLAQHILGMACAQPFDALELYEEVISAAPYARLAWETFERAVDLVATGGYALRTYERYAR 473

Query: 508 AVPDAEGVWRVPDARLARRHRMNIGTIVSDASMSVQFV----------GGAKIGSVEESF 557
                +G+WRV +  +A+++R+N+GTIV    ++++ V          GG  +G VEESF
Sbjct: 474 IRKTKDGLWRVSNPMVAQQYRLNVGTIVESPMLNIRMVKRNQRGSLGRGGMSLGKVEESF 533

Query: 558 VARMKPGDCFLFGGRLLELVRIHDMTAWVRRASGKRPAVPRWNGGRMPLSNTLADAVVRQ 617
           +  + PGD FLF G++L    I +    V +A    P VP + GG+ PLS  LA  V + 
Sbjct: 534 LEMLSPGDTFLFSGKVLRFEGIRENECLVSQAFSFDPKVPSYAGGKFPLSTYLAAQVRKM 593

Query: 618 LALAGDGAYDSPELQCVRPLLEIQQQWSALPTPHTLLAETLATREGSHLFLYPFAGRHVH 677
           LA   D A  +     VR  L +Q   S LP    LL ET       ++ +Y F GR  H
Sbjct: 594 LA---DPARRAGLPDQVRDWLALQGDVSMLPRDDELLIETFPRGSRHYMVIYAFEGRLAH 650

Query: 678 LGLASLLAWRVAQHEARTFSIAVNDYGFELLSATEVD--WPALLPQVLRLPEGNGEAGGA 735
             L  LL  R+ +   +       DY   + +  ++   + A  P + +L +        
Sbjct: 651 QTLGMLLTRRLDRAGLKPLGFVATDYSLAVWALDDMGAAFRARAPSLGQLFD-------- 702

Query: 736 DAALLHEVLASLNAGELAQRRFREIARVSGLVFQGYPGEKRSSRQLQASSSLFWEVFRKY 795
           +  L  ++ A LN   L +R FR  A ++GL+ Q +PG +++ RQ+  S+ L ++V R +
Sbjct: 703 EDMLGDDLEAWLNESFLLKRTFRNCAVIAGLIEQRHPGREKTGRQITVSADLIYDVLRAH 762

Query: 796 DPDNRLLQQAEQELLAQELEIGRLRASLVRMAGQQLVLKPLARPTPFSFPLMVELFREKL 855
           +PD+ LL+    +     L+IGRL + L R+ G  +  + L + +P + P+M+E+ RE +
Sbjct: 763 EPDHILLEATRNDAATGLLDIGRLGSMLKRIKG-HITHRRLDQISPLAIPVMLEIGRESV 821

Query: 856 SNESVADRIARMVEQL-EKAAGGAVTAG 882
             E+    +    + L  +A GG  T G
Sbjct: 822 HGEAQDFLLTEAADDLINEAMGGHGTDG 849