Pairwise Alignments

Query, 551 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) LigC from Variovorax sp. SCN45

Subject, 518 a.a., putative ATP dependent DNA ligase from Phaeobacter inhibens DSM 17395

 Score =  347 bits (891), Expect = e-100
 Identities = 225/551 (40%), Positives = 298/551 (54%), Gaps = 35/551 (6%)

Query: 1   MKAFAALYRELDASTSNLAKQAALQRYLREADAADAAWAVYFLAGGKPRQLVPTKLLRLL 60
           M+AFA L  +L  + S   K A L          +  +A+  + G    + V   LLR L
Sbjct: 1   MQAFAELLEQLAFTPSRNGKIAHLTTAFATIPDPERGYALAAITGDLALRNVTPSLLRGL 60

Query: 61  AQESAGLPEWLFDESYDAVGDLAETIALLLPPPSEVHDLGLAGWVEQHLLPLRDAAKAS- 119
             E    PE LF  SYD VGDLAET+AL+ P    V DL L   V +    L + AKA  
Sbjct: 61  VAEETD-PE-LFRLSYDFVGDLAETVALIWPHSDTVIDLSLTDAVHE----LTNTAKAQL 114

Query: 120 PDQLADRLRAQWRQLAAEERLVYFKLITGAFRVGVSKLQVTQALAAVGGIDAKRVAQRLM 179
           P  +A RL     Q+   +R  Y KL TG  RVGVS      ALA  G +D   + +   
Sbjct: 115 PALIARRLS----QMTPTQRYAYLKLATGGLRVGVSARLARSALAQFGDVDVTEIEELWH 170

Query: 180 GYTHIGARPQADDYRALIAPESGMEQVQKTSGQPY-PFFLAHPFNLPLDQFDAVLGPPSD 238
           G T          Y  L A   G E+    +  P+ P  L+   +L     D     P+D
Sbjct: 171 GLT--------PPYLPLFAWLEGGEKPVNLAAAPFRPVMLSTGTDLE----DLASLSPAD 218

Query: 239 WIVEWKWDGIRAQLVKRAGVAWVWSRGEELVTERFPELAALGEALPDGTVLDGEIAVWRD 298
           +I EWKWDGIR Q V   G   ++SR  E ++  FP++    EAL    VLDGE+ V R 
Sbjct: 219 FIAEWKWDGIRVQAVNDKGTRRLYSRTGEDISGSFPDVI---EALNFDGVLDGELLVKRG 275

Query: 299 GKVQPFAELQKRIGRKTLGAKLLRDIPVVLLAYDLLEWEGQDLRALPQSRRRVLLDELVA 358
             V PF +LQKR+GRK +G  +L   P  L  YD+L W G+DLR    + R++ L   V 
Sbjct: 276 DSVAPFGDLQKRLGRKKVGKAMLASHPAALRVYDVLYWNGEDLRPRTLADRQIHLKTCVC 335

Query: 359 RMRHPSLLPSPMLEGADWTDLATQREAARTMGVEGMMLKRRDAQYGVGRTKDVGVWWKWK 418
            +R P +  S  L+   W DLA  R       +EG+M+KRRD+ Y  GR +  G W+KWK
Sbjct: 336 DLRDPRIDLSLPLDFETWEDLAKLRADPPNSVIEGVMIKRRDSAYIAGRKR--GYWFKWK 393

Query: 419 IDPLSIDAVLIYAQRGHGRRASLFSDYTFAVWDSPPGQEDRKLVPFAKAYSGLTDAEMAR 478
            DP+ +DAV++YAQRGHG+R+  +SD+TF VW+      D +LVP  KAY G TDAE+  
Sbjct: 394 RDPMLVDAVMLYAQRGHGKRSGYYSDFTFGVWN------DDQLVPVGKAYFGFTDAELKE 447

Query: 479 VDAIIRKTTVESFGPVKSVKPTLVFELGFEGIARSTRHKSGIAVRFPRMLRWREDKPVEE 538
           +D  +R  T++ FGPV++VKP LV E+ FEG+  S+RHKSG+A+RFPR+ R R DKP  E
Sbjct: 448 LDRFVRNNTIDRFGPVRAVKPELVLEVAFEGLNESSRHKSGLAMRFPRINRIRTDKPALE 507

Query: 539 ADTLQTLAALL 549
           A TL  L A L
Sbjct: 508 AGTLAELRAFL 518