Pairwise Alignments

Query, 320 a.a., ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score = 84.3 bits (207), Expect = 3e-21
 Identities = 82/306 (26%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 6   RRLALTAVAAAAFASLPALAAEKVNLGVSIPAATHSFMGGINYWANQAKKDLEKEHKDL- 64
           R   LT + +AA  S       +    V+I  +T +     N +    K   E + K+L 
Sbjct: 2   RMKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLN-----NPFFVTMKDGAEAKAKELG 56

Query: 65  -KITIKTAANAP-EQANQLQDLSTVTKINALVVFPFESAALTKPVAQVKAKGAYVTVVDR 122
             + +  + N P ++ + ++DL TV  + A+++ P +S A++  +         V  +DR
Sbjct: 57  YNLIVLDSQNDPSKELSNVEDL-TVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDR 115

Query: 123 GLTDTSAQDAYVAGDNTAFGKIPAEYIVKQLNGKGNVVALRGIA-TTLDNERMDAFNAVL 181
           G +      +++A DN   G++   +I  ++     V+ L GIA T+   ER + F   +
Sbjct: 116 GASRGEVV-SHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAV 174

Query: 182 KGSPDIKLLDAKYANWNRDDAFKVTQDYLTRFKNIDAIWAADDDMAVGVLKAISQAKRDD 241
           KGS  ++LL ++ A+++R     V ++ L    ++ A++A +D+MA+G L+AI QA    
Sbjct: 175 KGS-KMQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAI-QASGKS 232

Query: 242 IKIVFGGAGAKDMVKTIMDGKDPRITADVSYSPKFIYDAIKLTAEARLKGEKLPATTIIP 301
           + IV G  G  D +  +  G   ++ A V+  P  I      TA+  LKGEK+ A   + 
Sbjct: 233 VMIV-GFDGTDDGIAAVERG---QLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVA 288

Query: 302 SVLITK 307
             +I K
Sbjct: 289 LKVIAK 294