Pairwise Alignments

Query, 344 a.a., ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

Subject, 339 a.a., ribose ABC transporter permease from Klebsiella michiganensis M5al

 Score =  190 bits (482), Expect = 5e-53
 Identities = 120/310 (38%), Positives = 185/310 (59%), Gaps = 17/310 (5%)

Query: 27  RWTERLHGLGPVIGLVLLCIAGTLLNGDFATLDNAMNVLTRTAFIGIIAVGMCFVIISGG 86
           +W +R+   G +I L++L I  +    +F  +DN +N+    +   I+A GM FVI++ G
Sbjct: 20  KWWDRV---GILIVLLVLLILMSTFAPNFNRVDNLLNIARSISVNAILAAGMTFVILTSG 76

Query: 87  IDLSVGSMAALIAGSVIMFINWAG-PASGSPLLAVVMGAVLAIVLGAVFGLAHGLLITKG 145
           IDLSVGS+ A ++G V +    AG PA     LA++ G    + +GA+ GL +G+L    
Sbjct: 77  IDLSVGSIVA-VSGVVSVVAAMAGIPAP----LAILAG----VGVGALCGLLNGVLTAYL 127

Query: 146 RIEPFIVTLGTLGIFRAYLTYFADGGALTLDNDLSDLYAPVYYASLAGIPVPVWVFVIVA 205
            + PFIVTLGT+   R  + Y    G   + + LS  +  +    L GIP+PV + ++V 
Sbjct: 128 ALAPFIVTLGTMTFLRG-MAYTITEGQPIVSSSLS--FRELGNGYLIGIPIPVIIMLVVY 184

Query: 206 IIGGVILNRTAYGRYVQAIGSNEQVARYAAVDVDRVKILTYVLLGVCVGIATLLYVPRLG 265
           ++   IL RT +GR++ A+G N Q AR A V V RV    Y++ GVC G+A +++  R+ 
Sbjct: 185 LLAWFILERTRFGRHIYAVGGNAQAARLAGVRVKRVLAAVYMIAGVCAGLAGIIFAARVI 244

Query: 266 SASPTTGLLWELEAIAAVIVGGTALKGGAGSITGTVVGAILLSVISNILNLTSIISVYLN 325
           SA PT G  +EL+AIAAV++GGT+L GG G I GT++G+I+L V+S  L L S +  +  
Sbjct: 245 SAQPTAGTGYELDAIAAVVLGGTSLAGGRGRIIGTLIGSIILGVLSTGLILLS-VPFFTQ 303

Query: 326 AAVQGFVIII 335
             ++G VII+
Sbjct: 304 LLIKGIVIIL 313