Pairwise Alignments

Query, 515 a.a., ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

Subject, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

 Score =  355 bits (912), Expect = e-102
 Identities = 204/499 (40%), Positives = 308/499 (61%), Gaps = 14/499 (2%)

Query: 20  VVKAFGPVQVLHGVSFALAPGRVYGLLGENGAGKSTLMKILAGYEQLTGGTLRINGQPQQ 79
           + KAF  V+ L   S  + PGRV  L+GENGAGKSTLMK+L G      G++   GQP  
Sbjct: 11  IEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEYQGQPVS 70

Query: 80  FGSSRDAEALGIVLIHQEFNLAEDLSVAQNIFLGHEKKK--GWLLDDAAMEREAAAALSA 137
           F   RD++  GI +IHQE NL   L++A+NIFLG E     G +L D  M R+A   L+ 
Sbjct: 71  FKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDE-MHRKADQLLAR 129

Query: 138 VGLNIDPRTKVRKLIVAEKQLVEIAKAIARRARLLVMDEPTATLTPGETERLFKLIAQLR 197
           + +    +T + +L + E+Q+VEIAKA++  +++++MDEPT  LT  ETE LF +I +LR
Sbjct: 130 LNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNVINELR 189

Query: 198 ADGVTIVYISHKLDEVEQVTDEVIVMRDGRFVARAPTPEVTRQQMANLMVGRELADLYPP 257
             G  IVYISH+L E+ ++ D++ V+RDG+F+      +     +  +MVGR+L + YP 
Sbjct: 190 EQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRKLEEQYPR 249

Query: 258 RDVVVAADAPAMRVRDFNVPG-WAQDASFEVRPGEILGFAGLVGAGRTELFEGLLGLRPA 316
               +AA    + +    + G    D SF ++ GEILG +GL+GAGRTEL + + G  P+
Sbjct: 250 ----IAAQQGDISLEVIGLTGSGVHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGALPS 305

Query: 317 S-GNVEMLGKPVPGGKGWRNPRDAAKHGLTYLSEDRKGKGLHVNFGLRQNLTLMALERYA 375
             G + + G+ V       +P+D   +G+ Y+SEDRKG GL +   +++N++L AL++ +
Sbjct: 306 ERGVINLNGRTVNPV----SPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQLS 361

Query: 376 QP-WLRPEAERGALAGAVKEYGIRTGSLEVKASSLSGGNQQKLALAKVLQPRPKVVVLDE 434
           +   +R   E  A+   ++ + I+T S E    +LSGGNQQK+A+AK L  +PKV++LDE
Sbjct: 362 KGVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDE 421

Query: 435 PTRGVDVGAKRDIYFLIQRLAREGLAVIVVSSELMELIGLCHRVAVMRAGRLVATLDADH 494
           PTRGVDVGAK++IY LI +   EG+++I+VSSE+ E++G+  R+ VM  GR+     A  
Sbjct: 422 PTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASE 481

Query: 495 LTEEELIAHATGTADTTAA 513
             +E+L+A A G     AA
Sbjct: 482 ADQEKLMACAVGRNPAHAA 500