Pairwise Alignments

Query, 475 a.a., integral membrane sensor signal transduction histidine kinase from Variovorax sp. SCN45

Subject, 639 a.a., cache domain-containing protein from Methanococcus maripaludis S2

 Score =  107 bits (268), Expect = 9e-28
 Identities = 76/300 (25%), Positives = 151/300 (50%), Gaps = 35/300 (11%)

Query: 194 LLSCVLLAYAYVSRLLRPLIDIREGAQRFGRGEFSQPIPIRRNDDLGDLAQRVNTMADDI 253
           LL  ++++Y     +++PL  +++GA+    G + Q + +  +D+ G+LA+  N MA  I
Sbjct: 326 LLIALIVSYLINRGIIKPLEQLKQGAEWVSNGRYDQKVIVDSDDEFGELAKAFNKMATQI 385

Query: 254 QAMLDA---------------------KRGLLLALSHELRSPLTRARLNAELLPATPEG- 291
               D                      K  L+  +SHELR+PLT  +   EL+     G 
Sbjct: 386 NISDDKLKKHAEELKISYNELKELDKLKSELIAVVSHELRTPLTSIKGYVELVLDGTMGA 445

Query: 292 --QAEREAL-LRDLN--EMRDLISDLLESERLASPHVALQREPVDLAALIRETVAEM-PG 345
              ++++ L + D N   +R LI  +L+  ++    + + RE V+L +++ + +  + P 
Sbjct: 446 INDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLRSIVCDVIEYLKPL 505

Query: 346 AQQVHLDLADGLPPHAV--DRMRIRLLVRNLLDNALRYSNGAPRPPCVSLRAALDGKRQG 403
           A + ++ L   +   A+  D+ RI  ++ NL++NA+++S   P    + +   L+ +   
Sbjct: 506 ATEKNIKLNKEVEDIAIEADKDRITQVLTNLIENAIKFS---PANESILVSGVLEDEH-- 560

Query: 404 VEIEVRDHGPGVDEAQLDRLTEPFYRTDGARARATGGVGLGMYLCRLIAEAHGGELMVRN 463
           + ++V D G G+ +  ++++   FY+ D +  R  GG GLG+ +C+ I EAH G + V +
Sbjct: 561 IHLKVTDRGAGIPKKDMEKIFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWVES 620