Pairwise Alignments

Query, 388 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 372 a.a., ABC-type branched-chain amino acid transport systems, periplasmic component from Pseudomonas stutzeri RCH2

 Score =  105 bits (261), Expect = 3e-27
 Identities = 89/348 (25%), Positives = 154/348 (44%), Gaps = 13/348 (3%)

Query: 3   LKTLTTLAVLGLIATLASAQQQQGVTKDEIRIGTIQDLSGPLAGFGKQARNGMQLRVDEL 62
           +KT   L+ + L   L  A     +  D IRIG    ++GP+A +G     G ++ ++++
Sbjct: 1   MKTKQRLSKIFLAMALTGAASYT-LAADTIRIGLAGPVTGPVAQYGDMQFIGAEMAIEQI 59

Query: 63  NEQGSVNGRKLKLFVEDSGYDPKKAVLAAQKLVNQEKIFIMAGHIGTAQNMAAMPVQFDK 122
           N+ G VNG +LK    D   DPK+AV  A K+VN    F++ GH+ ++    A  +  D+
Sbjct: 60  NKAGGVNGAQLKGVRYDDACDPKQAVAVANKIVNDNVKFVV-GHLCSSSTQPASDIYEDE 118

Query: 123 NVINYMPITAAREMYEPLNR-LKYSFAATYYDQIR-LALPKMIKDK-GAKKVCTIYQDDE 179
            +   + ITAA    +  +R  +  F     D ++       I D    K V  I+   +
Sbjct: 119 GI---LMITAASTSPDITSRGYELIFRTIGLDSLQGPTAGNFIADHVKPKNVAVIHDKQQ 175

Query: 180 FGLEVQRGAEAGLKAAGMELTEKTSFKRGATDFSSQVAKMKAANCDLVVLGTIIRETIGT 239
           +G  +    +  L+   +++        G  DFSS +AK+K    D V  G    E    
Sbjct: 176 YGEGIATAVKQTLEGKNIKVGLFEGINAGDKDFSSLIAKLKREGVDFVYYGGYHPELGLL 235

Query: 240 VGEARKTGFNPTFLGSSAAYTDLIHKLGGKAMDGIYATMTVQNPYTDEQSQPLRFWANKY 299
           + ++++ G N  F+G        I  + G A +G+Y T+    P + +Q    +   + +
Sbjct: 236 LRQSKEKGLNVRFMGPEGVGNSEISAIAGPASEGMYVTL----PKSFDQDPRNKELVDGF 291

Query: 300 KTKFNEDPTVFSVYGYVIIDSFIKAATKAGPNLTTDSFIKAMDSITFE 347
           K K  +    F    Y  +    +   KAG +  TD   +A+ S TF+
Sbjct: 292 KAKKQDPSGPFVFPAYAAVQVIAEGIEKAG-STDTDKVAEALRSNTFD 338