Pairwise Alignments

Query, 618 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

Subject, 549 a.a., AMP-binding protein from Methanococcus maripaludis S2

 Score =  114 bits (285), Expect = 1e-29
 Identities = 145/551 (26%), Positives = 230/551 (41%), Gaps = 86/551 (15%)

Query: 63  IAAGLQSIGFAPGECASILSNTVIEWVLADLAVLSCGGVSNGIYPTDAASQVHYLCEDSR 122
           +A GL  IG   G+   I +  V +W+    A    G V   +     + ++ Y+ + S 
Sbjct: 46  LAKGLLEIGIKKGDHIGIWARNVPDWLTFMFATAKIGVVLVTVNTAYKSHELAYVMKQSD 105

Query: 123 TTVLFVEDDEQLDKALEVRAGL-----------------PGLRCIVVFDMEGLRDLEDPG 165
              L + D  +    LE+   L                 P L+ ++    E  R     G
Sbjct: 106 MKALAIIDSFRDVNYLEILYELVPELKTSQRGKLNSEEFPYLKNVIYVGQEKHR-----G 160

Query: 166 VMSLDALRELGRARLSTDPQAVERTVAACRPEDLAILVYTSGTTGKPKGAMHSHAGLVYT 225
           + +   L  LG     +D + +E        +D+  + YTSGTTG PKG M +H  ++  
Sbjct: 161 MYNTTELMLLGN--YVSDEKLIEAK-KGLDSDDVINMQYTSGTTGFPKGVMLTHKNILNN 217

Query: 226 ARGYNTLIAQDEK---DERMCF-LPLCHIAERMGGEYFAMYTGSILNFVE--NPETVPEN 279
             GY   I + +K   +ER+C  +PL H    + G    +  G  L  +E  +P  V   
Sbjct: 218 --GY--YIGEKQKFTEEERLCLPVPLFHCFGIVLGVLALLTHGGTLVMLEIFDPLLVLAA 273

Query: 280 VREIAPTVFTAVPRVWEKFYSGVMIALKEAGPLQQAAYKWSIGVGEAIAAKVLAGEPVGA 339
           +++   T    VP ++   +S  M  + +   L+                       + A
Sbjct: 274 IQKEKCTAVYGVPTMFIAEFSHPMFEMFDLSSLRTG---------------------IMA 312

Query: 340 GLKFKFRLARLLALDNARKLIGIHRSRFLVTGAAPISPELVKWYLALGVPMLEVWGMTES 399
           G        + +  D   + I I    + +T A+P+         ++  P  +     ES
Sbjct: 313 GSTCPIEAMKKVMSDMYMREITIS---YGLTEASPVFT-----MTSVDDPFEK---RVES 361

Query: 400 CGASTAVPATRIKPGSIGPATGYNEVRIDPATGEILVRGPNVFMGYLNLPEKTAETIDPE 459
            G   A+P   +K   I P TG  E       GEI  RG NV  GY  +PEKTAE I+ +
Sbjct: 362 VGK--AMPHCEVK--IIDPETG--ETLAPGNVGEICCRGYNVMKGYYKMPEKTAEVIEKD 415

Query: 460 GWLHTGDVGVMDEDGYFRITDRMKDIIITAGGKNVTPSELENELKFSLYITDAVVIG--D 517
           GWLH+GD+ V DEDGY++I  R+KD+II  GG+N+ P E+E  L     I DA V+G  D
Sbjct: 416 GWLHSGDLAVEDEDGYYKIVGRIKDMII-RGGENIYPREIEEFLYTMPGINDAQVVGIPD 474

Query: 518 KKPYLTVI---------VMIDQENVEKFAQDHDVPFSNYESLTRTKEVLDLIQGEIDRVN 568
           +K Y  ++           I +E+V  FA +    +   + +   +E      G+I +  
Sbjct: 475 EK-YGEIVGAFVIPKEGYEIKEEDVRDFALEKIARYKVPKHVFVVEEFPMTASGKIQKFK 533

Query: 569 AKFARVEQIKK 579
                VE +KK
Sbjct: 534 LTELAVELLKK 544