Pairwise Alignments

Query, 291 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 328 a.a., high-affinity branched-chain amino acid transport permease protein from Phaeobacter inhibens DSM 17395

 Score =  160 bits (405), Expect = 4e-44
 Identities = 103/321 (32%), Positives = 173/321 (53%), Gaps = 34/321 (10%)

Query: 4   LQLLLSGIAQGCIYGLIALGFVLIYKATETVSFAQGDLMMLGAF---GAFAGM------- 53
           +++ L+G+  G +Y L+ALGFVLIYKA+   ++AQG + +  A    G   G        
Sbjct: 9   MEVTLNGLMAGVLYALVALGFVLIYKASGIFNYAQGVMALFAAMTLVGIMNGQVPFSHVI 68

Query: 54  -SLFG---------MPFWLAAILAVVAMAAFGVLLELVVIRSILGQPQFSIVMLTIGIAY 103
            ++FG         +P ++A ++ V  M     +++  V+R ++GQ    + M TIG+AY
Sbjct: 69  NAIFGGHITHFGWTVPSFVAIVMTVGVMVLLAWMVQHFVMRHLVGQEPIILFMATIGLAY 128

Query: 104 VARGVITMVPGIGTETHTLAVPYKDQIW---------KLGELVVNLEQLAIIIATAVLCG 154
              GV  ++ G   +   + +P    +W           G  + NL+ +A +IA  ++ G
Sbjct: 129 FLEGVADLMWGSEIKALDVGLPQGINLWIDETTYQIFDYGFFIDNLDIVATVIAALLVMG 188

Query: 155 LLFAMFRYSKLGIAMQASSQNQLAAYYMGIPVKRLNGLVWGLAAAVAAIAGMLLAPITFV 214
           L+ A  +Y+K G AM+A + +  AA  +GI +  +  LVW +A  VA +AG++    + V
Sbjct: 189 LV-AFAQYTKQGRAMRAVADDHQAALSVGISLNFIWVLVWSVAGFVALVAGIMWGTKSGV 247

Query: 215 HANMGFIGLKAFPAAVVGGFGSLPGAIVGGLVIGIVESFAGFYL----PDGFKDTAPYIV 270
             ++  I LKA P  ++GGF S+PGAIVGGL+IG+ E    F +        ++   Y++
Sbjct: 248 QFSLSLIALKALPVLMLGGFTSIPGAIVGGLIIGVGEKLFEFMIGPMVGGATENWFAYVL 307

Query: 271 VLLMLMIKPNGLFGEKLRKKV 291
            LL L+ +P GLFGEK+ ++V
Sbjct: 308 ALLFLVFRPQGLFGEKIIERV 328