Pairwise Alignments

Query, 371 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 372 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  143 bits (361), Expect = 7e-39
 Identities = 99/348 (28%), Positives = 165/348 (47%), Gaps = 9/348 (2%)

Query: 4   SKLPRRRGLLKGAAVAAGAMSVPMVSMAQTTSLRFQSTW-PAKDIFHEYALDYAKKVNDM 62
           S++ +R  LL  A VA   ++    +  +   L    TW P   IF +   + A     M
Sbjct: 17  SRVMKRSVLLIAAGVAL--LTTSAFAEEKVYRLTLAETWGPNFPIFGDTTKNMAAMAEKM 74

Query: 63  AGNRLKIEVLPAGSVVPAFQLLDAVAKGTLDGGHGVVAYWYGKNSALALWGSGPGYGMDA 122
           +  RL+I +  A        + D V  G  D GH    YW GK      + S P +GM  
Sbjct: 75  SNGRLQIRIDSANKHKAPLGVFDMVKSGQYDMGHSASYYWKGKVPNTLYFTSMP-FGMTT 133

Query: 123 NMILAWHTYGGGKALMDEIYKGLNLDVASYLYGPMPTQPLGWFKKPVAKAEDMKGLKFRT 182
               AW  +GGG  LM+++Y   N+   S+  G    Q  GWF+K +   ED++GLK R 
Sbjct: 134 GEQYAWFYHGGGMELMEKVYSPHNM--LSFPGGNTDVQMGGWFQKEINSVEDLQGLKMRI 191

Query: 183 VGLAVDVFTDMGAAVNPLPGGEIVPALDRGLIDAAEFNNASSDRVLGFPDVAKNCMLQSF 242
            G A +V  ++GA    +  GE+  +L+R  IDA E+   S D  +GF  +A       +
Sbjct: 192 PGFAGEVLAELGAKPTNIAPGELYTSLERRTIDALEWVGPSLDLRMGFHKIAP-YYYTGW 250

Query: 243 HQSGEQFEVLFNGSKLKSLPPELKSIIEYATQAASADMSWKAIDRNSKDYEELKK--AGI 300
           H+   + + L N      LP +L+ I+  A + A+ DM  +++  + K++  + +    +
Sbjct: 251 HEPATELQFLVNQKTWDKLPEDLREILRVAMRTAAYDMYVQSVHESGKNWVSITQEFPDV 310

Query: 301 KFYKTPDAVLRAQLASWDKTIAKKSAENPMFKKVLDSQRAFAERAGQW 348
           K    P  V++A     D+ +AK +AE+P+ K++ +SQ  + ++   W
Sbjct: 311 KVKTFPAPVIKALREVNDRLLAKHAAEDPLAKEIQESQANYLKQTRSW 358