Pairwise Alignments

Query, 371 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 338 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

 Score = 58.5 bits (140), Expect = 3e-13
 Identities = 69/287 (24%), Positives = 133/287 (46%), Gaps = 31/287 (10%)

Query: 55  YAKKVNDMAGNRLKIEVLPAGSVVPAFQLLDAVAKGTLDG---GHGVVAY---WYGKNSA 108
           +A+ V + +G ++++++ P G++    Q + A+  G ++      G++A     +G    
Sbjct: 52  FAELVKEKSGGKIEVKLFPGGTLGGDVQTVSALQGGVIEMTVLNAGILASNVKEFGAVDL 111

Query: 109 LALWGSGPGYGMDANMILAWHTYGGGKALMDEIYKGLNLDVASYLYGPMPTQPLGWFKKP 168
             L+ SG     +A+ ++       G +LM+ +     + VA   Y  +  + L   + P
Sbjct: 112 PFLFDSGE----EADKVMDGPF---GTSLMERLPATGLVGVA---YWELGFRNLTNNRHP 161

Query: 169 VAKAEDMKGLKFRTV--GLAVDVFTDMGAAVNPLPGGEIVPALDRGLIDAAEFNNASSDR 226
           V K ED+KGLK RT+   + V++F  +GA   PLP  E+  AL+ G +D  E  N S++ 
Sbjct: 162 VTKLEDIKGLKIRTIQSPIPVELFNALGANAVPLPYTELYTALETGTVDGQE--NPSANI 219

Query: 227 VLGFPDVAKNCMLQSFHQSGEQFEVLFNGSKLKSLPPELKSIIEYATQAASADMSWKAID 286
           +       +  M  + HQ   Q  VL +      L  E K++++ A   A       + +
Sbjct: 220 INAKFYEVQKYMTLTRHQYNPQI-VLVSKKFWDGLNDEEKTVLQQAAVEARDFQRKVSRE 278

Query: 287 RNSKDYEELKKAGIKFYKTPDAVLRAQLASWDKTIAKKSAENPMFKK 333
           +++   EE++K G++  +           S ++T   + A  PM +K
Sbjct: 279 QDAAALEEIRKTGMEVSE----------LSAEETQKLRDAVKPMIEK 315