Pairwise Alignments

Query, 371 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 348 a.a., TRAP transporter, subunit DctP from Phaeobacter inhibens DSM 17395

 Score = 54.3 bits (129), Expect = 5e-12
 Identities = 73/271 (26%), Positives = 120/271 (44%), Gaps = 21/271 (7%)

Query: 9   RRGLLKGAAVAAGAMSVPMVS-MAQTTSLRFQSTWPAKDIFHEYALD-YAKKVNDMAGNR 66
           RR LL GAA A   M++   S MAQ  +L+     PA+    +  LD +A KV   +  R
Sbjct: 4   RRKLL-GAAGAVALMAMGATSAMAQEVTLKLHQFLPAQANVPKLILDVWADKVEASSDGR 62

Query: 67  LKIEVLPA---GSVVPAFQLLDAVAKGTLDGGHGVVAYWYGKNSALALWGSGPGYGMDAN 123
           +KI+  P+   G   P  +L+D    G  D    VV Y  G+  +  ++       M  N
Sbjct: 63  IKIDRYPSMQLGGKPP--ELMDQAIDGVADIVWTVVGYTPGRYPSTEVFELP---FMMTN 117

Query: 124 MILAWHTYGG--GKALMDEIYKGLNLDVASYLYGPMPTQPLGWFKKPVAKAEDMKGLKFR 181
              A H Y     + + D  +K + + + ++++GP           PV   +D++G+K R
Sbjct: 118 ARAASHAYWEMFDEHMKDTEFKDVKI-LGTWVHGPGIIHTTD----PVESPDDLRGMKIR 172

Query: 182 TVGLAVD-VFTDMGAAVNPLPGGEIVPALDRGLIDAAEFNNASSDRVLGFPDVAKN-CML 239
             G +V+ + T++GA    +P   I  AL +G+ID            L  P++ +N    
Sbjct: 173 GGGRSVNGLLTELGATPVGMPVPAIPEALSKGVIDGTTI-PWEVTTALKVPELVENHTEF 231

Query: 240 QSFHQSGEQFEVLFNGSKLKSLPPELKSIIE 270
                    F +  N  K +SLP +LK  ++
Sbjct: 232 TGRALYTLTFVLAMNKEKYESLPDDLKKAVD 262