Pairwise Alignments

Query, 628 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

Subject, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  102 bits (253), Expect = 5e-26
 Identities = 59/197 (29%), Positives = 104/197 (52%), Gaps = 5/197 (2%)

Query: 38  LMLSLVVVAIMLGFPTAFTLMGMGMIFTWLAYDRDWNRTLDLMVQSAFKTMAND-VLIAV 96
           L+  LV+  +++G P A +L G+  I   L +    + +L  + Q+ F   A    L+A+
Sbjct: 5   LLFILVIGMMIVGVPIAISL-GLSSILFLLWHS---DASLASVAQTLFNAFAGHYTLLAI 60

Query: 97  PLFVFMGYLVERANLIESLFKSLHLALARLPGALAVATLVTCTIFATATGIVGAVVTLMG 156
           P F+     +    + + + +     +    G LA+A++V C +FA  +G   A V  +G
Sbjct: 61  PFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIG 120

Query: 157 LLALPAMLRAGYSVPLAAGSITAGGCLGILLPPSVLLIVYGATAGVSVVQLYAGAFFPGL 216
            + +  M++ GYS   AAG I   G LGIL+PPS++++VY A   VSV +++ G   PGL
Sbjct: 121 SIVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATNVSVGRMFLGGVVPGL 180

Query: 217 MLSSLYVLYVIIVAWLK 233
           +   + ++ + I A +K
Sbjct: 181 LAGLMLIIAIYITARIK 197



 Score = 87.8 bits (216), Expect = 9e-22
 Identities = 55/227 (24%), Positives = 109/227 (48%), Gaps = 23/227 (10%)

Query: 421 MLLIFSVLGSIVLGLATPTEAAAMGALGGMLLAA-AYRRLNLAV---------------- 463
           +LL+  +LG I  G+ TPTEAAA+ A+    +A   YR +                    
Sbjct: 221 LLLVVIILGGIYGGIFTPTEAAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETF 280

Query: 464 ----LKESVFLTAKTSAMVCWLFVGSAIFSAAFALLGGQALVEEWVLGMNLTKVEFLILS 519
                K +++   K + M+ ++   + I            ++ E +L   L  + FLI+ 
Sbjct: 281 VHKDTKATLYDAGKLTIMLMFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVV 340

Query: 520 QVIIFLLGWPLEWTEIIVIFMPIFIPLLDNFGVDPLFFGLLVALNLQTAFLSPPVAMAAF 579
            +I+ + G  +E + ++VI  P+  P+    G+DP+  G+++ +N++   ++PPV +  F
Sbjct: 341 NLILLVGGQFMEPSGLLVIVAPLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLF 400

Query: 580 YLKGVSPPHVTLNQIFLGMLPFMGIQVLAIVLLYMWPQIGLWLPQLL 626
              GV+   +++  +    LP++G+  L ++++   P +  WLP LL
Sbjct: 401 VTSGVA--KMSMMNVVKAALPWVGVMFLFLIIVTYVPWVSTWLPTLL 445