Pairwise Alignments

Query, 628 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

Subject, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  169 bits (427), Expect = 3e-46
 Identities = 89/211 (42%), Positives = 138/211 (65%), Gaps = 1/211 (0%)

Query: 406 RLEIFKMLLASFFPLMLLIFSVLGSIVLGLATPTEAAAMGALGGMLLAAAYRRLNLAVLK 465
           R E+ K L A   PL L++  VLGSI  G+ATPTE+AA+G  G +LLA AY + + +++ 
Sbjct: 213 RQEVVKALKAVIPPLALIVV-VLGSIFAGVATPTESAALGGAGAILLALAYGQFSWSMVY 271

Query: 466 ESVFLTAKTSAMVCWLFVGSAIFSAAFALLGGQALVEEWVLGMNLTKVEFLILSQVIIFL 525
           ++   T K +AMV  + +G+  FS AF   GG  LVEEW++ +   K  FLI++ ++I +
Sbjct: 272 DASKETVKVTAMVFAILLGATAFSMAFTYTGGDELVEEWMMNLPGDKWGFLIVTMLVILI 331

Query: 526 LGWPLEWTEIIVIFMPIFIPLLDNFGVDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVS 585
           LG+ +++ EI  I +PI  P+     VD  +F +L+A+NLQT+FL+PP   + FYLKGV+
Sbjct: 332 LGFFIDFVEICFIIVPILAPVAVLMDVDMTWFAILIAMNLQTSFLTPPFGFSLFYLKGVA 391

Query: 586 PPHVTLNQIFLGMLPFMGIQVLAIVLLYMWP 616
           P  VT   I+ G++PF+ IQ+L ++ L ++P
Sbjct: 392 PKSVTTMDIYRGVVPFILIQILVLISLMVFP 422



 Score =  162 bits (411), Expect = 2e-44
 Identities = 92/230 (40%), Positives = 140/230 (60%), Gaps = 14/230 (6%)

Query: 35  LGLLMLSLVVVAIMLGFPTAFTLMGMGMIFTWLAYDRDWNRTLDLMVQSAFKTMANDVLI 94
           +G++M  + + A++LGFP AFT  G+ +IF   A   +    +   +QS    M N VL+
Sbjct: 2   IGIVMFFVALFALLLGFPVAFTFGGIALIFGLWAEGIEMFAFMPYRIQSI---MENTVLM 58

Query: 95  AVPLFVFMGYLVERANLIESLFKSLHLALARLPGALAVATLVTCTIFATATGIVGAVVTL 154
           AVPLFVFMG ++++  L E L +S+      + G +A++T++  T+ A +TG+VGA V  
Sbjct: 59  AVPLFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVA 118

Query: 155 MGLLALPAMLRAGYSVPLAAGSITAGGCLGILLPPSVLLIVYGATAGVSVVQLYAGAFFP 214
           MGL++LP ML+  Y   LA G+I A G LG ++PPS++LI+ G   GV V  L+  A +P
Sbjct: 119 MGLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALWP 178

Query: 215 GLMLSSLYVLYVIIVAWLKPQWAPP------LSQAERVVP-----LPPLS 253
           GLML + Y++Y++I A L PQ A P      LS+ + VV      +PPL+
Sbjct: 179 GLMLVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLA 228