Pairwise Alignments

Query, 628 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

Subject, 468 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  111 bits (278), Expect = 6e-29
 Identities = 71/240 (29%), Positives = 125/240 (52%), Gaps = 12/240 (5%)

Query: 386 VSFAIFGALVTLFYLFLSFARLEIFKMLLASFFPLMLLIFSVLGSIVLGLATPTEAAAMG 445
           ++ A+  ALV L  L   F     F  ++A   P++L+     G + +G  TPTEAA   
Sbjct: 234 MNLAVGIALVVLLALDWYFD----FSAVMALMTPIILI-----GGMTMGWFTPTEAAVAA 284

Query: 446 ALGGMLLAAA-YRRLNLAVLKESVFLTAKTSAMVCWLFVGSAIFSAAFALLGGQALVEEW 504
            +  + L    YR + ++ L  + F T +T+A V ++   ++IF+    +     ++   
Sbjct: 285 VIWSLFLGLVRYRTMTMSTLARATFDTIETTASVLFIVTAASIFAWLLTVSQAAQMLSGA 344

Query: 505 VLGMNLTKVEFLILSQVIIFLLGWPLEWTEIIVIFMPIFIPLLDNFGVDPLFFGLLVALN 564
           +L +   K  FLIL  +++  +G  L+    I I +PI +PL   FG+DP+ FGL++ LN
Sbjct: 345 ILTITDNKWVFLILVNLLMLFVGCFLDTIAAITILVPILLPLTAQFGIDPVHFGLIMTLN 404

Query: 565 LQTAFLSPPVAMAAFYLKGVSPPHVTLNQIFLGMLPFMGIQVLAIVLLYMWPQIGLWLPQ 624
           L    L PP+ M  F L  V+   +++ +  + +LP++    +A++L+   P + LWLPQ
Sbjct: 405 LMIGLLHPPLGMVLFVLSRVA--KLSVERTTMAILPWLVPLFIALILITFVPAVVLWLPQ 462



 Score = 80.5 bits (197), Expect = 2e-19
 Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 6/196 (3%)

Query: 37  LLMLSLVVVAIMLGFPTAFTLMGMGMIFTWLAYDRDWNRTLDLMV-QSAFKTMANDVLIA 95
           LL++   +V +++G P A ++    ++     Y   +N   D++  Q     + +  L+A
Sbjct: 2   LLLVGSFLVLMLVGVPVAISMAAASVL-----YLVSYNVAPDIIAAQRMIAGVESFPLLA 56

Query: 96  VPLFVFMGYLVERANLIESLFKSLHLALARLPGALAVATLVTCTIFATATGIVGAVVTLM 155
           VP F+  G L+  A +   ++      +  + G LA   +V   IF+  +G   A    +
Sbjct: 57  VPFFILAGNLMNSAGVTGRIYSFAVALVGWMKGGLAQVNIVGSVIFSGMSGTALADAAGI 116

Query: 156 GLLALPAMLRAGYSVPLAAGSITAGGCLGILLPPSVLLIVYGATAGVSVVQLYAGAFFPG 215
           G + + AM   GY V  A G   A   LG + PPS+  ++YG  A VS+  L+     PG
Sbjct: 117 GTIEIKAMKDHGYPVDAAVGVTAASATLGPIFPPSLPFVIYGMMANVSIGALFMAGVVPG 176

Query: 216 LMLSSLYVLYVIIVAW 231
           ++++ L +L V I A+
Sbjct: 177 VVMTVLMMLTVAIFAY 192