Pairwise Alignments

Query, 369 a.a., Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system from Variovorax sp. SCN45

Subject, 354 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  172 bits (436), Expect = 1e-47
 Identities = 114/353 (32%), Positives = 179/353 (50%), Gaps = 12/353 (3%)

Query: 6   RVWLGASLAT-LVLGGAGFGLAMKLRPAHAEGGGMPPA----KVAVATAQKTQVARFLSG 60
           R+   A LAT LVLGG    +        A+G    PA     V VA  ++ +VA  +  
Sbjct: 2   RILRQAVLATVLVLGGGAALVGRSWLMPDADGKQSAPALRALPVEVAAVRRARVADRVEA 61

Query: 61  IGTLEANRQVEVPAEVEGRVAKILFTPGGEVRAGQLLVQLNDAPEQGDMERLTAQRANAK 120
           +GT  A++ + V     GR+ ++ F PG +V  G +LV+L+DA ++ D+E   A      
Sbjct: 62  VGTTRAHQAIAVVPLASGRIVEMPFPPGRKVNKGDVLVRLDDAAQRADVEEAEATLTQVS 121

Query: 121 ALLERTRRLLPQQAATQEQLEQAQAAFDQASGDLRRAQAVLEQKRIKAPFDGVLGIRRVN 180
             LER R L   QA  Q  ++  Q+    A+  L RA   L  + I APF G++G R ++
Sbjct: 122 RALERARSLRRTQAVAQATVDDLQSNRAAAAARLDRAHKDLADRVIAAPFAGIVGFRELD 181

Query: 181 LGQFVRAGDALVSLTDSRTLFANLTLPETALPVLKRNQQVALSVDAYPGRVFQGRLSTIE 240
           +G  V  G+ L +L D  ++     +PE     L+    +  +  A+PGR+F G +  I+
Sbjct: 182 VGARVSEGERLTTLDDLSSVDVEFAVPEIHFGRLRPGMAIEATSQAFPGRIFTGAIDRID 241

Query: 241 PQIGSDTRTVRLQATIDNADGALTPGMFVNGKVALPARPDAITVPETAITYSTHGDSVFV 300
            +IG  +R  R++AT+ N  G L  G+F+N  + +  RP A+ VPE AI     G  V+V
Sbjct: 242 SRIGEVSRAFRVRATLPNPQGLLPSGLFLNVSIVIEERP-ALMVPEEAIQAEAGGSVVYV 300

Query: 301 VRPAEKGDGFTAQQVFVKAGERQDGLVVIENGLAPGDKVVTSGQLRLYTGAAV 353
           ++      G   ++  +  G+R    V + +GLA GD+VV+ G  RL  G+ V
Sbjct: 301 IQ------GGAVRRQPIVLGQRTGTAVEVRDGLAEGDQVVSRGIQRLRDGSPV 347