Pairwise Alignments

Query, 477 a.a., Multidrug efflux system, outer membrane factor lipoprotein => OpmD of MexHI-OpmD system from Variovorax sp. SCN45

Subject, 490 a.a., RND efflux system, outer membrane lipoprotein, NodT from Pseudomonas syringae pv. syringae B728a

 Score =  222 bits (566), Expect = 2e-62
 Identities = 158/471 (33%), Positives = 230/471 (48%), Gaps = 18/471 (3%)

Query: 13  LSLLVLAGCAVGPKYTAPSDAPVA---ISAPE--RSLFAGDAVQRDWWRQLDDPQLDALI 67
           +S  +L+GCAVGP Y  P DAP+A   ++ P    ++ A   V   WW   DDP L + +
Sbjct: 11  MSTGLLSGCAVGPDYQRP-DAPLADRYLTQPRGAANITAHPPVSAAWWDGFDDPLLSSFV 69

Query: 68  DRALAENHEIRIAQARLLEARATQTEAELDRLPVVTASASKTRGIAQGNDGL------QP 121
            RALA+N ++  A A+L +ARA    A    LP     A   R        L       P
Sbjct: 70  SRALAQNLDLAQASAQLAQARAGADAATAALLPSGNIDAQTARAHQSVETPLGQVLNSAP 129

Query: 122 DVRSLSQSSRAGFDASWEIDLFGRLKRLDEAATARAEASAADLEQVRIVAVAELARNYYE 181
                  S  A   ASWE+D+FG LKR  +AA A  +AS A +   R+   A  A  Y  
Sbjct: 130 GYDRYGNSYEANLTASWELDVFGGLKRSRQAALAEYQASQAGVVAARLAVAARTADTYIN 189

Query: 182 MRGAEQRIAVTRRTLDSLRQSLRVTEAQVRTGRGLEGD--LASAQANLATTESQLPALET 239
           +RG + R+A+T R L + RQ L + + Q+   RGL  D  +   +A L   ++ +P L+T
Sbjct: 190 IRGLQARLAITNRQLKT-RQDL-LEKVQLLHERGLSPDYEVRQIEAELLQVQATVPILQT 247

Query: 240 ARRQSAYRVAVLAGLRPAELEPMLRPQP-LRVLDKRLPIGDMADLLRRRPDVLRAERGLA 298
               +   + V+ G+ P      L     +    +    G  ADLLRRRPD++ AER LA
Sbjct: 248 GLDAAMNALDVMLGVPPGTHRGSLAETGRIPHAPELTSTGTPADLLRRRPDLIVAERRLA 307

Query: 299 ASTADVGAVTAELYPRFDIGGFLGFI-ALRGSDLGSSSSRAFSVTPGVSWPALRLGSVKA 357
           AS A +G   +E YP+  +   LG   A+   +L +  +   +   G+ W     G V A
Sbjct: 308 ASNARIGVAISEYYPKLSLSALLGSATAVSSGNLFTGGASQSAGILGLRWRLFDFGRVNA 367

Query: 358 RVRGAEARAQGDRALYEQTVLRAIEDVEGALTGYGQNQLRLQRLVEASARSGRAAELAEV 417
           R+  A+ +     A Y Q+VLRA EDVE A +     + +   L +       A + +  
Sbjct: 368 RISQAKGQEAEALAAYRQSVLRATEDVENAFSSLASRETQAAMLGKGETALASARQSSFA 427

Query: 418 RYREGAAPYLSVLDAQRTLLRAQDAVAEAETASYTSLVALYKALGGGWQAP 468
            Y +GAA  + VL A   +L+  DA A+A+  S  + VA++KALGGGWQ P
Sbjct: 428 SYSKGAASLIEVLRADEKMLQVADAKAQAQVESAQAAVAVFKALGGGWQMP 478