Pairwise Alignments

Query, 640 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

Subject, 597 a.a., AMP-dependent synthetase and ligase (RefSeq) from Shewanella sp. ANA-3

 Score =  211 bits (536), Expect = 1e-58
 Identities = 165/579 (28%), Positives = 276/579 (47%), Gaps = 18/579 (3%)

Query: 22  WQTWTWNAVAQEVREMACGLASLGFKAFDNLAIVGANRPHLYMAVIAAQSLRGVPVPLYQ 81
           W   +W A  Q   ++A  L  LG +  D   I+  N P    A I     R V VP+Y 
Sbjct: 34  WHQVSWQAFDQISHKIAQVLIELGVQVQDRCVILSQNCPQWTCADIGTLKSRAVVVPIYP 93

Query: 82  DAVAGEMVFMLQDAGIEFVIVEDQEQVDKLLECRDIQQGKLPAIRHVIYDDPKGLRHYDQ 141
            +   +  F++ DA  + + V+D +Q     E     Q + P + HVI  D       D+
Sbjct: 94  TSTLEQASFIINDAAAKVIFVDDAKQYALACEL----QKQCPTLEHVIVFDASVELAQDK 149

Query: 142 PGLMSYEQLRALGREFDKANPGYYDRAVASGEATDVGVILYTSGTTGRPKGVCQTHASFI 201
                 + L  L +E+ ++     ++ +      D+  ++YTSGTTG PKGV   + +  
Sbjct: 150 AQHQHLDSL--LAKEYGQS--AELEQRLKDANLDDLLTLIYTSGTTGDPKGVMLDYRNMA 205

Query: 202 AAGRGGVETDRLGPGDNIMSYLPMAWVGDHLFSVAQWLVGGFTLNCPESSETVMNDMREI 261
           +  R   +      GD  +++LP++ V +  +S      GG  +   ++++ V   +  +
Sbjct: 206 STVRQHDQILPFTTGDVSLAFLPLSHVFERGWSFYVLCRGGHNVYL-QNTQRVKEAISAV 264

Query: 262 GPSYYFGPPRTFEGLLTAVSIRMEDAAAPKRWLYAKFMALARRVGADILNGAPVGMGDRA 321
            P      PR  E + +AV  ++  +A  ++ L+A  M +  R        A  G+    
Sbjct: 265 RPHTLCVVPRFLEKVYSAVQDKVAKSAEGRKKLFAWAMGVGERQFEVSQGRAKGGLWLSL 324

Query: 322 LYALGNLLIYGPLRNVLGMSRIRVAYTAGAAIGPDLFRFYRSIGVNLKQFYGQTETCAYV 381
            + L + L+Y  L+ VLG  R++     GAA+  ++  F+ +IG+ +   YG TET A V
Sbjct: 325 QWRLAHKLVYSKLQAVLG-GRLKFMPCGGAALDLNVASFFHAIGIPVLCGYGMTETNATV 383

Query: 382 -CLQQDGKVKLQTVGTAAPGIELKIAADGEVLVRGVSVLKEYYKRPDATAEVLDANGYFH 440
            C   D +V     G   P IE+K+  D E+LVRG +V++ YY RP+ TA   + +G+  
Sbjct: 384 TCNTLDNRVAGSN-GKVLPEIEVKLGKDDEILVRGDTVMRGYYNRPEDTAAAFE-DGWLK 441

Query: 441 TGDAGVLDSEGHLRIIDRAKDVGRLVGGAIFAPNYIENKLKFFPQIKEAVCFGNARDEVC 500
           TGDAG LD+ G+L I DR K++ +   G   AP  +E  +   P I++     +AR+ V 
Sbjct: 442 TGDAGRLDANGNLFITDRIKELMKTSNGKYIAPQRVEGTVGRCPFIEQVAVIADARNYVT 501

Query: 501 AAINIDFEAVGNWAERRGLAYGGYVDLAGKPDVLALVAECIGKVNADLATEDGMGETQIA 560
           A I   FE++  WA+ +GL Y   ++L     V+    + +  +  +LA     G  QI 
Sbjct: 502 ALIVPAFESLEAWAKDKGLKYESPIELLRHSHVVEHFEQRLKHLQQELA-----GFEQIK 556

Query: 561 RFLVLHKELDPDDDELTRTRKVRRGFIAEKYAVLVDALY 599
           +F +L +    +   +T T K+RR  I  KYA  ++A+Y
Sbjct: 557 KFTLLPEAFSMEAGLITPTLKLRRKMIYHKYAHEINAMY 595