Pairwise Alignments

Query, 320 a.a., ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 418 a.a., ABC-type branched-chain amino acid transport system, permease component from Pseudomonas stutzeri RCH2

 Score =  107 bits (268), Expect = 4e-28
 Identities = 81/324 (25%), Positives = 147/324 (45%), Gaps = 21/324 (6%)

Query: 4   LTVSPAQLRAAEAVFWIALASSFFLLPDKLTLMSQIMIFGLFAVSLDMALGYAGILTVGH 63
           LT+   Q     A+  +AL   F+     + + + I+I+ +  + L++ +G AG+L +G+
Sbjct: 85  LTLPSTQRWIILALVLVALVWPFYGSRGAVDIATLILIYVMLGLGLNIVVGLAGLLDLGY 144

Query: 64  AAFFGAGAYAAGLLAKYGWSEPFTGLLFALVVSGLLGYALSYLVVRGADLTRLMITIGVC 123
             F+  GAY   LL+ Y     +T L  A  ++ L G+ L + V+R       ++T+G  
Sbjct: 145 VGFYAVGAYTYALLSHYYGVGFWTALPIAGAMAALFGFLLGFPVLRLRGDYLAIVTLGFG 204

Query: 124 VLLFEVANRLSGITGGTDGLQGVVIAPVLGF-FD-----------------FDLYGKTAF 165
            ++  +   ++ +TGG +G+ G+    + G  FD                 ++   K  F
Sbjct: 205 EIIRILLRNMTSVTGGPNGISGIDKPTLFGLSFDRRAAEGMQTFHEYFGVAYNSVNKVIF 264

Query: 166 CYAFGVVLAMFLL--VRLVLRSPFGLALRGIHDSRKRMLAIGSPVEARLRMAYAFSAAVA 223
            Y   ++L +  L  +  +LR P G A   + +      A+G         A+   A  A
Sbjct: 265 LYLIALLLVLLTLFVINRLLRMPIGRAWEALREDEIACRALGMNPTVIKLSAFTLGATFA 324

Query: 224 GVAGALLAQTTQFVGIESIGFNRSAEVLIILVLGGTGRLYGGMIGAIVYMLVHDWFADMN 283
           G AG+  A     V  ES  F  SA +L I+VLGG G   G ++ AIV +L+ +   + +
Sbjct: 325 GFAGSFFAARQGLVSPESFTFIESAIILAIVVLGGMGSQLGVILAAIVMILLPELMREFS 384

Query: 284 PQYWMFWLGIFLIAAVMLGRGGIM 307
            +Y M   G  ++  ++    G++
Sbjct: 385 -EYRMLMFGALMVLMMIWRPQGLL 407