Pairwise Alignments

Query, 773 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Variovorax sp. SCN45

Subject, 854 a.a., ATP-dependent chaperone ClpB from Pseudomonas stutzeri RCH2

 Score =  293 bits (750), Expect = 3e-83
 Identities = 196/472 (41%), Positives = 281/472 (59%), Gaps = 38/472 (8%)

Query: 2   IAQELEVSLHMAFVEARQQRHEFITVEHLLLALLDNP--SAAEVLRACSANVDDLRASLT 59
           +  +L+++L  A   A    H  I   HL+ ALL+    S   +L     ++  LR +LT
Sbjct: 6   LTSKLQLALSDAQSIAVGLDHPAIEPLHLMQALLEQQGGSIKPLLMQVGFDIAALRQALT 65

Query: 60  NFIKDNTPQVAG-TDDVDTQPTLGFQRVIQRAIMHVQSTGNGKKEVTGANVLVAIFGEKD 118
             + D  P++   T D++    L   R++ +A    Q  G+  + ++   VL+A     D
Sbjct: 66  KEL-DQLPKLQNPTGDMNLSQDLA--RLLNQADRLAQQKGD--QYISSELVLLAAL---D 117

Query: 119 SHAVYYLHQQGVTRLDVVNFIAHGIKKSDPPEAVKG--AGEAPSNEGEEGGGERNEKASP 176
           S+          TRL  +  +A G+ K     A+     G+A ++   E      E    
Sbjct: 118 SN----------TRLGKL-LLAQGVSKKALENAINNLRGGDAVNDPNAE------ESRQA 160

Query: 177 LEQFTQNLNQLAKDGKIDPLIGREYEVERVIQILCRRRKNNPLLVGEAGVGKTAIAEGLA 236
           L+++T ++ + A+DGK+DP+IGR+ E+ R IQ+L RR KNNP+L+GE GVGKTAI EGLA
Sbjct: 161 LDKYTVDMTKRAEDGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLA 220

Query: 237 WRITQGDVPEILAESNVFSLDMGALLAGTKYRGDFEQRLKGVLKSL-KDKPNAILFIDEI 295
            RI  G+VP+ L +  + +LDMG+L+AG K+RG+FE+RLK VL  L K +   ILFIDE+
Sbjct: 221 QRIVNGEVPDGLKDKRLLALDMGSLIAGAKFRGEFEERLKAVLNDLSKQEGRVILFIDEL 280

Query: 296 HTLIGAGAASGGTLDASNLLKPALSSGQLKCIGATTFTEYRGIFEKDAALSRRFQKVDVV 355
           HT++GAG A G  +DA N+LKPAL+ G+L C+GATT  EYR   EKDAAL RRFQKV V 
Sbjct: 281 HTMVGAGKAEGA-MDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVLVD 339

Query: 356 EPSVQETVDILKGLKSRFEEHHGVKYAVAALQAAAELSAKYINDRHLPDKAIDVIDEAGA 415
           EPS ++T+ IL+GLK R+E HHGV     A+ AAA+LS +YI DR LPDKAID+IDEA +
Sbjct: 340 EPSEEDTIAILRGLKERYEVHHGVTITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAAS 399

Query: 416 AQRILPPSKRKKTISKTEVEEIVAKIARIPPANVSNDD---RSKLQTIERDL 464
             R+   SK ++ + + +   I  KI R   A    DD   + +L  +E D+
Sbjct: 400 RIRMEIDSKPEE-LDRLDRRLIQLKIER--EALKKEDDEATKKRLAKLEDDI 448



 Score =  272 bits (695), Expect = 6e-77
 Identities = 165/430 (38%), Positives = 258/430 (60%), Gaps = 29/430 (6%)

Query: 340 EKDAALSRRFQKV-DVVEPSVQETVDILKGLKSRFEEHHG-------VKYAVAALQAA-- 389
           E D A  +R  K+ D +    +E  D+ +  KS   E  G       ++ A A L+AA  
Sbjct: 432 EDDEATKKRLAKLEDDIAKLAREYADLEEIWKSEKAEVQGSAQIQQKIEQAKAELEAARR 491

Query: 390 -------AELSAKYINDRHLPDKAIDVIDEAGAAQRILPPSKRKKTISKTEVEEIVAKIA 442
                  AEL    I D    +++++++D+ G  +  L  +K    ++  E+ E+V+K  
Sbjct: 492 KGDLARMAELQYGIIPDL---ERSLEMVDQHGKKENQLLRNK----VTDEEIAEVVSKWT 544

Query: 443 RIPPANVSNDDRSKLQTIERDLKSVVFGQDKALEVLASAVKMARSGLGKGDKPIGSFLFS 502
            IP + +   +R KL  +E  L + V GQ +A+  +++AV+ +R+GL   ++P GSFLF 
Sbjct: 545 GIPVSKMLEGERDKLLRMEDMLHTRVIGQHEAVVAVSNAVRRSRAGLADPNRPSGSFLFL 604

Query: 503 GPTGVGKTEAAKQLA-YIMGIE--LIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTE 559
           GPTGVGKTE  K LA ++   E  +IR DMSE+ME+H+V+RLIGAPPGYVG+++GG LTE
Sbjct: 605 GPTGVGKTELCKALAEFLFDTEEAMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTE 664

Query: 560 AVTKKPHAVLLLDEIEKAHPDIFNVLLQVMDHGTLTDNNGRKADFRNVIIIMTTNAGAET 619
           AV +KP++V+L+DE+EKAHPD+FNVLLQV++ G LTD++GR  DF+N +I+MT+N G+ T
Sbjct: 665 AVRRKPYSVVLMDEVEKAHPDVFNVLLQVLEDGRLTDSHGRTVDFKNTVIVMTSNLGS-T 723

Query: 620 MNKATIGFTNPRQAGDEMGDIKRLFSPEFRNRLDAIVNFKALDENIILRVVDKFLLQLET 679
             +  +G    ++A   M  +   F PEF NR+D +V F  L    I  + D  L +L  
Sbjct: 724 QIQELVGDPGAQRAA-VMDAVAHHFRPEFINRIDEVVVFDPLGREQIAGIADIQLGRLRK 782

Query: 680 QLSEKKVEVTFSDKLRKHLAKKGFDPLMGARPMQRLIQDTIRRALADELLFGRLTDGGRL 739
           +L+E+++ +  S +    L   G+DP+ GARP++R IQ  I   LA ++L G+   G  +
Sbjct: 783 RLAERELSLELSQEAMDKLIAVGYDPVYGARPLKRAIQRWIENPLAQQILSGQFAPGSSV 842

Query: 740 EVDLDDKDEV 749
           +  ++ +  V
Sbjct: 843 KARVEGEQIV 852