Pairwise Alignments

Query, 773 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Variovorax sp. SCN45

Subject, 879 a.a., ATP-dependent chaperone ClpB from Rhodopseudomonas palustris CGA009

 Score =  300 bits (769), Expect = 2e-85
 Identities = 192/458 (41%), Positives = 272/458 (59%), Gaps = 38/458 (8%)

Query: 17  ARQQRHEFITVEHLLLALLDNPSAAE---VLRACSANVDDLRASLTNFIKDNTPQVAGTD 73
           A ++ H+  +  H+L  LLD+        + RA   +   L+A  T       P+V+G+ 
Sbjct: 21  AMREGHQQFSPLHILKVLLDDSEGLAGGLIDRAGGNSRAILKA--TEEALGKMPKVSGSG 78

Query: 74  DVDTQPTLGFQRVIQRAIMHVQSTGNGKKEVTGANVLVAIFGEKDSHAVYYLHQQGVTRL 133
                      R    A    +  G+    VT   +L+A+  +KDS A   L + GVT  
Sbjct: 79  AGQVYLAPATARAFDAAEKAAEKAGDSF--VTVERLLLALSLDKDSEAGQLLTKGGVTPQ 136

Query: 134 DVVNFIAHGIKKSDPPEAVKGAGEAPSNEGEEGGGERNEKASPLEQFTQNLNQLAKDGKI 193
           ++ N   + ++K       + A  A +    +           L+++ ++L Q A+DGK+
Sbjct: 137 NL-NAAINALRKG------RTADSATAENAYDA----------LKKYARDLTQAARDGKL 179

Query: 194 DPLIGREYEVERVIQILCRRRKNNPLLVGEAGVGKTAIAEGLAWRITQGDVPEILAESNV 253
           DP+IGR+ E+ R IQ+L RR KNNP+L+GE GVGKTAI EGLA RI  GDVPE L +  +
Sbjct: 180 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLALRILNGDVPESLKDKKL 239

Query: 254 FSLDMGALLAGTKYRGDFEQRLKGVLKSL-KDKPNAILFIDEIHTLIGAGAASGGTLDAS 312
            +LDMGAL+AG KYRG+FE+RLK VL  +   +   ILFIDE+HTL+GAG A  G +DAS
Sbjct: 240 LALDMGALIAGAKYRGEFEERLKAVLNEVTAAEGGIILFIDEMHTLVGAGKAD-GAMDAS 298

Query: 313 NLLKPALSSGQLKCIGATTFTEYRGIFEKDAALSRRFQKVDVVEPSVQETVDILKGLKSR 372
           NLLKPAL+ G+L CIGATT  EYR   EKDAAL+RRFQ V V EP+V++TV IL+GLK +
Sbjct: 299 NLLKPALARGELHCIGATTLDEYRKHVEKDAALARRFQPVFVSEPTVEDTVSILRGLKDK 358

Query: 373 FEEHHGVKYAVAALQAAAELSAKYINDRHLPDKAIDVIDEAGAAQRILPPSKRK------ 426
           +E+HHGV+ A +AL AA  LS +YI DR LPDKAID++DEA A  ++   SK +      
Sbjct: 359 YEQHHGVRIADSALVAAVTLSNRYITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDSMD 418

Query: 427 KTISKTEVEEIVAKIARIPPANVSNDDRSKLQTIERDL 464
           + I + ++E+   K    P        +++L T+E++L
Sbjct: 419 REIVRLKIEQEALKKETDP------GSKARLVTLEKEL 450



 Score =  271 bits (693), Expect = 1e-76
 Identities = 229/783 (29%), Positives = 368/783 (46%), Gaps = 86/783 (10%)

Query: 17  ARQQRHEFITVEHLLLAL-LDNPS-AAEVLRACSANVDDLRASLTNFIKDNTPQVAGTDD 74
           A +    F+TVE LLLAL LD  S A ++L        +L A++    K  T   A  ++
Sbjct: 99  AEKAGDSFVTVERLLLALSLDKDSEAGQLLTKGGVTPQNLNAAINALRKGRTADSATAEN 158

Query: 75  VDTQPTLGFQRVIQRAIMHVQSTGNGKKE-VTGANV----LVAIFGEKDSHAVYYLHQQG 129
                   +  + + A    Q+  +GK + V G +      + +   +  +    + + G
Sbjct: 159 A-------YDALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPG 211

Query: 130 VTRLDVVNFIAHGIKKSDPPEAVKG------------AGEAPSNEGEEGGGERNEKASPL 177
           V +  +V  +A  I   D PE++K             AG     E EE       + +  
Sbjct: 212 VGKTAIVEGLALRILNGDVPESLKDKKLLALDMGALIAGAKYRGEFEERLKAVLNEVTAA 271

Query: 178 EQ----FTQNLNQLAKDGKID----------PLIGR------------EYEVERVIQILC 211
           E     F   ++ L   GK D          P + R            EY  + V +   
Sbjct: 272 EGGIILFIDEMHTLVGAGKADGAMDASNLLKPALARGELHCIGATTLDEYR-KHVEKDAA 330

Query: 212 RRRKNNPLLVGEAGVGKT-AIAEGLAWRITQGDVPEILAESNVFSLDMGALLAGTKYRGD 270
             R+  P+ V E  V  T +I  GL  +  Q     I   + V ++ +       ++  D
Sbjct: 331 LARRFQPVFVSEPTVEDTVSILRGLKDKYEQHHGVRIADSALVAAVTLSNRYITDRFLPD 390

Query: 271 -----FEQRLKGVLKSLKDKPNAILFID-EIHTLIGAGAASGGTLDASNLLKPALSSGQL 324
                 ++    +   +  KP  +  +D EI  L          ++   L K      + 
Sbjct: 391 KAIDLMDEAAARLKMQVDSKPEELDSMDREIVRL---------KIEQEALKKETDPGSKA 441

Query: 325 KCIGATTFTEYRGIFEKDAALSRRFQKVDVVEPSVQETVDILKGLKSRFEEHHGVKYAVA 384
           + +  T   E   + EK AAL++R+          Q+    L  L+              
Sbjct: 442 RLV--TLEKELADLEEKSAALTQRWSAEKNKLSDAQKLKSELDALRIELANAQ----RRG 495

Query: 385 ALQAAAELSAKYINDRHLPDKAIDVIDEAGAAQRILPPSKRKKTISKTEVEEIVAKIARI 444
             Q A EL+   I +       I+  + +GA          ++ ++   + ++V++   +
Sbjct: 496 EYQRAGELAYGRIPELEKKIAEIEANENSGAMV--------EEAVTANHIAQVVSRWTGV 547

Query: 445 PPANVSNDDRSKLQTIERDLKSVVFGQDKALEVLASAVKMARSGLGKGDKPIGSFLFSGP 504
           P   +   ++ KL  +E  L   V GQ +A+  +++AV+ AR+GL   ++P+GSF+F GP
Sbjct: 548 PVDKMLEGEKEKLLRMEEQLGQRVVGQFEAVHAVSTAVRRARAGLQDPNRPMGSFMFLGP 607

Query: 505 TGVGKTEAAKQLA-YIMGIE--LIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAV 561
           TGVGKTE  K LA Y+   E  ++R DMSE+ME+H+V+RLIGAPPGYVG+D+GG+LTEAV
Sbjct: 608 TGVGKTELTKALAEYLFDDETAMVRIDMSEFMEKHSVARLIGAPPGYVGYDEGGVLTEAV 667

Query: 562 TKKPHAVLLLDEIEKAHPDIFNVLLQVMDHGTLTDNNGRKADFRNVIIIMTTNAGAETMN 621
            ++P+ V+L DEIEKAHPD+FNVLLQV+D G LTD  GR  DFRN +I+MT+N G+E + 
Sbjct: 668 RRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIVMTSNLGSEYLV 727

Query: 622 KATIGFTNPRQAGDEMGDIKRLFSPEFRNRLDAIVNFKALDENIILRVVDKFLLQLETQL 681
               G          MG ++  F PEF NR+D I+ F  L ++ + R+VD    +L   L
Sbjct: 728 NQPEGEDTGAVREQVMGMVRAHFRPEFLNRVDEIILFHRLQKSEMGRIVDIQFARLTKLL 787

Query: 682 SEKKVEVTFSDKLRKHLAKKGFDPLMGARPMQRLIQDTIRRALADELLFGRLTDGGRLEV 741
            ++K+ +      R  LA+KG+DP  GARP++R+IQ +++  LA+ +L G + DG  + +
Sbjct: 788 EDRKIVLDLDAAARDWLAEKGWDPAYGARPLKRVIQRSVQDPLAEMILEGSVKDGDHVAI 847

Query: 742 DLD 744
             +
Sbjct: 848 SAE 850