Pairwise Alignments

Query, 393 a.a., Branched-chain amino acid ABC transporter, substrate-binding protein LivJ (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 378 a.a., amino acid/amide ABC transporter substrate-binding protein, HAAT family from Pseudomonas syringae pv. syringae B728a

 Score =  134 bits (336), Expect = 6e-36
 Identities = 107/386 (27%), Positives = 187/386 (48%), Gaps = 17/386 (4%)

Query: 7   HRFLRHVAVLSAALLATPLAALAAAATGEPVWFGVSGPLTGQNAQYGAQWKAGFDLALEH 66
           H F R   +  A   A  +++ A A     V  GV+GP+TG NA +G Q+  G   A + 
Sbjct: 3   HTFYRKGFLAIAVATALGVSSFAQA----DVKIGVAGPMTGANASFGQQYMKGAQAAADA 58

Query: 67  INAQGGIQGRPLAYNFEDSQSDPRQSVAIAQKLVNDKRVLIELGDFSSPASMAASPIYQR 126
           INA GG+ G  +     D   +P+Q+VA+A +LV+  +V+  +G F S +++ AS IY  
Sbjct: 59  INAAGGVNGEKIVLIAGDDACEPKQAVAVANRLVDQDKVIGVVGHFCSSSTIPASEIYDE 118

Query: 127 AGLVQLGFTNSHPDFTKGGDYIWSPSISQADAQPLLA-ELAVKTLGFKRIAVLYLNTDWG 185
           AG++ +   +++P  T+ G         + D Q ++A +  V  L  K++AV+     +G
Sbjct: 119 AGVIAITPGSTNPTVTERGLKDMFRMCGRDDQQGVVAGDYIVDVLKGKKVAVINDKDTYG 178

Query: 186 RTSKDVLVKAAQERGAQVAIAEGYQPDEKDFRSTLVRVRDANPDGLVLISYYPDGALIAG 245
           +   D       +RG +  + EG    EKDF + + ++R  + D +     +P+   +  
Sbjct: 179 KGLADATAAQLTKRGVEPILEEGLTRGEKDFSALVTKIRSVDADVVYFGGLHPEAGPLVR 238

Query: 246 QVRSVGLRQP--IAAVGSVYSPKFIELGGAS-VNGIFTNTAFYPDEPRA--EVQDFVKSF 300
           Q+R  GL+    ++  G V        GGA  V+G++     +  +PRA  + +  V  F
Sbjct: 239 QMREQGLKDVKFMSDDGVVTDELVTTAGGAQYVDGVYMT---FGADPRALPDSKAVVDQF 295

Query: 301 RAKYNKEPDAFNAYAYDAVVYAAAALRQAGANADRKAVRDAFYKIKDVPSVIFGKASFDA 360
           R K   EP+ +  YAY +V   AA     GA +++      + K   V +V+ G+ ++DA
Sbjct: 296 R-KAGYEPEGYTLYAYASVQALAAGFN--GAKSNKGDAAATWLKANPVKTVM-GEKAWDA 351

Query: 361 QTRRIIGVKSVNLVVKDGKWAQLDEK 386
           +    +    V      GK+ QL+++
Sbjct: 352 KGDLKVSDYVVYQWDAAGKYKQLEKQ 377