Pairwise Alignments

Query, 800 a.a., Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) from Variovorax sp. SCN45

Subject, 777 a.a., penicillin-binding protein 1B from Vibrio cholerae E7946 ATCC 55056

 Score =  147 bits (371), Expect = 2e-39
 Identities = 93/256 (36%), Positives = 140/256 (54%), Gaps = 7/256 (2%)

Query: 81  MIGEFGEERRNLTPFANIPKVMKDAVLAVEDARFYDHGGVDYKGFLRAAVASLKGGRK-Q 139
           M+ +   E+R        P+V+ DA+L  ED  FY H GV      RA V +LK GR  Q
Sbjct: 171 MLEKDSPEQRLFLRRDQFPEVLVDALLVTEDRDFYQHDGVSPLAIGRAMVVNLKAGRTVQ 230

Query: 140 GASTITMQVARNVYLSSERTMSRKTYEILLALRLEQQLTKDQILEIYLNQIYLG----NR 195
           G ST+T Q+A+N++LSS+RT+ RK  E  +AL ++ + +KD+ILE YLN++YLG    + 
Sbjct: 231 GGSTLTQQLAKNIFLSSDRTLWRKLREAYMALIIDYRYSKDRILEAYLNEVYLGQSGADA 290

Query: 196 AYGFAAAAETYFGKPLQDVTIAEAAMLAGLPKAPGANNPVANPRRARARQLYVIDRMQET 255
            +GF  A+  YFG+PLQ++ I + A+L G+ K P   NP+    RAR R+  V+  M E 
Sbjct: 291 IHGFGLASRLYFGQPLQELRIDQLALLVGMVKGPSYYNPMRYAERARERRDLVLKLMMEH 350

Query: 256 GFITAEQAAAAKKEELHLRDAADPNRLHAEYVAETVRQMMYAQYGDSIYT-SGLKVYTSL 314
             +TA +   A    L ++  A        Y  + V   +  + GD     SGL+V+TSL
Sbjct: 351 DILTAPEYQQAVTRPLDVQKTAQIASRQPAYF-QQVSIELKEKLGDKFKADSGLRVFTSL 409

Query: 315 VAADQAAAYKSLRKGI 330
               Q+   +++   I
Sbjct: 410 DPVSQSKLEQAIHDQI 425



 Score =  145 bits (366), Expect = 8e-39
 Identities = 99/289 (34%), Positives = 147/289 (50%), Gaps = 15/289 (5%)

Query: 442 EVEAAFIGMDPRSGAIKALVGGFDFGKNKFNHVTQAWRQPGSSFKPFIYSAALEKG--FT 499
           ++EAA I +D  SG I+A+VGG   G + FN V  A RQ GS  KP +Y  AL     + 
Sbjct: 435 DLEAAAIAVDRHSGEIRAMVGGKRTGYDGFNRVLNASRQIGSLVKPAVYLTALAHPDQYN 494

Query: 500 PATVVNDAPLYFDPSANGGQPWEPKNFEGTYEGPMPLRTALMKSKNLVTLRVLQSIGAPY 559
            AT + D PL    S   G  W P+N++  Y G +PL  AL +S N+ T+ +   +G   
Sbjct: 495 LATTLEDKPLTLKGSE--GSAWTPRNYDRQYRGEVPLYLALAQSLNVPTVALGMKLGIDQ 552

Query: 560 AQDWVTKFGFDKDKQPANLPMGLGAGSVTPMQMAVGYSVFANGGYRVNPYLVTKVTDMKG 619
               + K G ++D+      M LG+ S+TP Q+A  Y    N G +     +  V D++G
Sbjct: 553 VSATLGKLGVNRDEIRPVPSMLLGSFSLTPYQVAQMYQTLTNSGKKAPLSALRSVLDLEG 612

Query: 620 KVLMETEPPVLDESRRAIPQRNAFIMSSLLQSVVRNGTGFKAYQALKRDDLYGKTGTTND 679
            VL E+ P V     +A+ Q+ A++ +  ++  V+ GTG           L GKTGTTND
Sbjct: 613 NVLYESLPRV----SQAVDQQAAWLTTYAMKQGVQEGTGRYLNAQFSSAALAGKTGTTND 668

Query: 680 SFDTWFAGFQPTMVGVAWVGYD--TPRQLGVRGETGGSLSLPIWTGYMQ 726
           + D+WF G     V   W+G D   P +L     TG S +L ++  Y++
Sbjct: 669 NRDSWFVGVDGREVTTIWLGRDDNQPTKL-----TGASGALRVYAQYLK 712