Pairwise Alignments

Query, 307 a.a., Nucleoside ABC transporter, permease protein 2 from Variovorax sp. SCN45

Subject, 308 a.a., Uncharacterized ABC-type transport system, permease component from Pseudomonas stutzeri RCH2

 Score =  199 bits (507), Expect = 5e-56
 Identities = 123/310 (39%), Positives = 178/310 (57%), Gaps = 14/310 (4%)

Query: 5   LDILANPAFWVAVLRIATPLILGTLGVLLCERAGVLNLGIEGIMVAGAFTGWLAVYAGAP 64
           +D+L N   + A++R  TPL+L  LG L+CE++GVLNLG EG+M+ GA  G++  +A   
Sbjct: 3   MDLLTN--IFYAMIRTGTPLLLVALGELVCEKSGVLNLGQEGMMLFGAVIGFIVAFASGN 60

Query: 65  LWVGVGVAALTGMVFGLLHAFLTVGLALSQHVSGLGITLLATALSYF--GYRVSFPKVNT 122
           LW+GV  A L G++  LL A + +G   +Q  +GL +T+    LS F     V  P    
Sbjct: 61  LWLGVLFACLAGVLLSLLFAMVALGFNANQVATGLALTIFGVGLSSFVGASWVGKPLAGF 120

Query: 123 PPTITPFAPMDWLPV--PILNAQTALTLFALLLVPVVGWVLYRTPLGLALRMAGENPQAA 180
            P   P   +  +PV   +L AQ  L   +  L  +V WVL ++ +GL ++  GENP AA
Sbjct: 121 EPIAIPL--LSEIPVIGRMLFAQDLLVYLSFGLFALVAWVLLKSRIGLIIQAVGENPNAA 178

Query: 181 ESQGVSVAATRTGAIVAGSALMGMAGSFLTLSAFNAFFFNMVNGRGWICVALVVFASWRP 240
            + G+ V   RT A++ G A+ G+AG +++L+    +  NM  GRGWI +ALVVFASWR 
Sbjct: 179 SAMGLPVLRVRTLAVMFGGAMAGLAGGYMSLAYTPMWAENMTAGRGWIALALVVFASWRV 238

Query: 241 GKALLGALLFAFFDALQLRLQQSGDAVLPYQLYLMLPYLLSILALVLVARKA-----SYP 295
            + LLGA LF     L L  Q  G A+ P  L  MLPY+ +IL LVL++R A       P
Sbjct: 239 SRVLLGAYLFGLASILHLVAQGLGLAI-PGNLLAMLPYVATILVLVLLSRDAIRTRLYAP 297

Query: 296 QALMKPYRKG 305
            +L +P++ G
Sbjct: 298 VSLGQPWQPG 307