Pairwise Alignments

Query, 307 a.a., Nucleoside ABC transporter, permease protein 2 from Variovorax sp. SCN45

Subject, 313 a.a., inner-membrane translocator (NCBI) from Rhodospirillum rubrum S1H

 Score =  416 bits (1068), Expect = e-121
 Identities = 207/312 (66%), Positives = 246/312 (78%), Gaps = 7/312 (2%)

Query: 3   DLLDILANPAFWVAVLRIATPLILGTLGVLLCERAGVLNLGIEGIMVAGAFTGWLAVYAG 62
           DLLD+L +   W  VLRIATPLI GTLG LLCERAGVLNLGIEGIM  GA  GWL+VY G
Sbjct: 2   DLLDLLLSAGLWATVLRIATPLIFGTLGELLCERAGVLNLGIEGIMTLGALVGWLSVYQG 61

Query: 63  APLWVGVGVAALTGMVFGLLHAFLTVGLALSQHVSGLGITLLATALSYFGYRVSFPKVNT 122
             LW GV +AA  GM  GLL   LTV L LSQHV+G+G+TLL T+LSY+ YR++ P+  T
Sbjct: 62  CDLWTGVMLAACAGMAAGLLQGLLTVPLGLSQHVTGIGVTLLCTSLSYYVYRLALPQTTT 121

Query: 123 PPTITPFAP-----MDWLPV--PILNAQTALTLFALLLVPVVGWVLYRTPLGLALRMAGE 175
           PP+I PFAP     +  LPV   +L  QT LT+ AL  V  + W+LYRTPLGLA+RM GE
Sbjct: 122 PPSIAPFAPFGDGALADLPVIGGVLAQQTPLTMVALCAVVAIAWLLYRTPLGLAIRMVGE 181

Query: 176 NPQAAESQGVSVAATRTGAIVAGSALMGMAGSFLTLSAFNAFFFNMVNGRGWICVALVVF 235
           NP AA++QG+SV A R GA++AGSALM + G+FLTLSAFNAFFFNM+ GRGWIC+ALVVF
Sbjct: 182 NPAAADAQGISVTAVRMGAVMAGSALMAVGGAFLTLSAFNAFFFNMIGGRGWICIALVVF 241

Query: 236 ASWRPGKALLGALLFAFFDALQLRLQQSGDAVLPYQLYLMLPYLLSILALVLVARKASYP 295
           ASWRPGKAL GALLFA FDALQ RLQQ GD+ +PYQ+YLM PY+LSI+ALV+++R+A+YP
Sbjct: 242 ASWRPGKALFGALLFALFDALQTRLQQGGDSGIPYQVYLMAPYVLSIVALVVMSRRAAYP 301

Query: 296 QALMKPYRKGER 307
           QALM P+RKGER
Sbjct: 302 QALMIPFRKGER 313