Pairwise Alignments

Query, 775 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Variovorax sp. SCN45

Subject, 857 a.a., chaperone protein ClpB from Vibrio cholerae E7946 ATCC 55056

 Score =  214 bits (544), Expect = 2e-59
 Identities = 128/331 (38%), Positives = 191/331 (57%), Gaps = 16/331 (4%)

Query: 450 VTEASAIAHFAKSTGLPESFLRDDQPLDDTQVHGFFAQKLFGQDAAIGHLKDVVYLFKAG 509
           VT+A      +K TG+P S + + +     ++     +++ GQ  A+  + + +   +AG
Sbjct: 531 VTDAEIAEVLSKQTGIPVSKMLEAEKEKLLRMEDVLHKRVIGQKEAVEVVANAIRRSRAG 590

Query: 510 LNDPAKPIATLLFAGPTGVGKTAAAKALARYFFGAGDDADPLFRIDMSEFQHAFQIARLI 569
           L+DP +PI + LF GPTGVGKT   K LA + F   D  D + R+DMSEF     +ARL+
Sbjct: 591 LSDPNRPIGSFLFLGPTGVGKTELCKTLANFLF---DSEDAMVRVDMSEFMEKHSVARLV 647

Query: 570 GSG------KRPGKLVEHVRRQPFSVVLLDEIEKADASVFDLLLTVLDEGRLRDSRGRMT 623
           G+       +  G L E VRR+P+SV+LLDE+EKA   VF++LL VLD+GRL D +GR  
Sbjct: 648 GAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTV 707

Query: 624 DFRSTVIVMTTNLGVRHGASLGFGEPANGG---GAVHDIRQFFRPEFFNRIDRVVPFAPL 680
           DFR+TV++MT+NLG        F      G     +  + + FRPEF NR+D  V F PL
Sbjct: 708 DFRNTVVIMTSNLGSSR-IQENFARLDYQGIKEQVMDVVSKHFRPEFLNRVDESVVFHPL 766

Query: 681 SRTAIEAIAVQELQAIAQREGLARRGVRLNFSPEVVAFVADKGFSPKYGARPLQRAVEQH 740
            +  I++IA  +L  + QR  LA R  +L    E +  +A  GF P YGARPL+RA++Q+
Sbjct: 767 GQEHIKSIASIQLARLRQR--LAERDYQLEVDDEALDLIAHVGFDPVYGARPLKRAIQQN 824

Query: 741 VVAAVARAMF-GPVADGACLEVGLVDGVVVA 770
           V   +A+++  G    G+ + + + DG + A
Sbjct: 825 VENPLAKSILAGKFLPGSPILLSVKDGNIFA 855



 Score = 43.1 bits (100), Expect = 6e-08
 Identities = 48/196 (24%), Positives = 77/196 (39%), Gaps = 13/196 (6%)

Query: 245 NLLLVGEPGVGKSVVILEAIRKAHRLTAARDAPPTFWRSH------AERLVGRAKYLGEW 298
           N +++GEPGVGK+ ++ E +  A R+    +  P   R           LV  AKY GE+
Sbjct: 201 NPVIIGEPGVGKTAIV-EGL--AQRI--INNEVPEGLRGRRVLSLDMGALVAGAKYRGEF 255

Query: 299 QALCDQTVEWLDMSNG--LLWVTDFVNLLQVGGESPEESMAAYLLPALRRGTLRLVGEAN 356
           +      +  L    G  +L++ +   ++  G           L PAL RG L  VG   
Sbjct: 256 EERLKSVLNELAKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATT 315

Query: 357 PSELEIARQRLPGFIDCFETLRLPEMDSVRARRVLDLFAGHAKNTLSIEIERPALDTGYR 416
             E     ++ P     F+ + + E        +L       +    +EI  PA+     
Sbjct: 316 LDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAAS 375

Query: 417 LLGRYVRYDSFPGKAV 432
           L  RY+     P KA+
Sbjct: 376 LSHRYISDRQLPDKAI 391