Pairwise Alignments

Query, 775 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Variovorax sp. SCN45

Subject, 868 a.a., ATP-dependent protease from Sinorhizobium meliloti 1021

 Score =  214 bits (545), Expect = 2e-59
 Identities = 129/319 (40%), Positives = 192/319 (60%), Gaps = 21/319 (6%)

Query: 456 IAHF-AKSTGLPESFLRDDQPLDDTQVHGFFAQKLFGQDAAIGHLKDVVYLFKAGLNDPA 514
           IAH  ++ TG+P   + + +     ++    A+ + GQ  A+  +   V   +AGL DP 
Sbjct: 538 IAHIVSRWTGIPVDKMLEGERDKLLRMEDELAKWVVGQGDAVQAVSRAVRRSRAGLQDPN 597

Query: 515 KPIATLLFAGPTGVGKTAAAKALARYFFGAGDDADPLFRIDMSEFQHAFQIARLIGSG-- 572
           +PI + +F GPTGVGKT   KALAR+ F   DD   L RIDMSE+     +ARLIG+   
Sbjct: 598 RPIGSFIFLGPTGVGKTELTKALARFLF---DDETALMRIDMSEYMEKHSVARLIGAPPG 654

Query: 573 ----KRPGKLVEHVRRQPFSVVLLDEIEKADASVFDLLLTVLDEGRLRDSRGRMTDFRST 628
               +  G L E VRR+P+ VVL DEIEKA   VF++LL VLD+GRL D +GR  DF++T
Sbjct: 655 YVGYEEGGALTESVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNT 714

Query: 629 VIVMTTNLGVRHGASLGFGEPANGGGAVHD-----IRQFFRPEFFNRIDRVVPFAPLSRT 683
           +I+MT+NLG  +  +LG  E ++   AV D     +R  FRPEF NR+D ++ F  L R+
Sbjct: 715 MIIMTSNLGAEYLTALGENEDSD---AVRDQVMEVVRAAFRPEFLNRVDEIILFHRLRRS 771

Query: 684 AIEAIAVQELQAIAQREGLARRGVRLNFSPEVVAFVADKGFSPKYGARPLQRAVEQHVVA 743
            + AI   +L+ +  R+ L+ R + L    +   F+AD+G+ P YGARPL+RA++++V  
Sbjct: 772 EMGAIVDIQLERL--RKLLSDRKITLELEDDARVFLADRGYDPAYGARPLKRAIQKYVQD 829

Query: 744 AVA-RAMFGPVADGACLEV 761
            +A + + G   DG+ ++V
Sbjct: 830 PLAEKVLQGEFPDGSVIKV 848



 Score = 37.7 bits (86), Expect = 3e-06
 Identities = 46/195 (23%), Positives = 76/195 (38%), Gaps = 11/195 (5%)

Query: 245 NLLLVGEPGVGKSVVILE-AIRKAHRLTAARDAPPTFWRSHAERLVGRAKYLGEWQALCD 303
           N +L+GEPGVGK+ +    A+R  +                   L+  AK+ GE++    
Sbjct: 202 NPVLIGEPGVGKTAIAEGLALRIVNGDVPESLKDKRLMALDMGALIAGAKFRGEFEERLK 261

Query: 304 QTVEWLDMSNG--LLWVTDFVNLLQVGGESPEESMAAYLLPALRRGTLRLVGEANPSELE 361
             +  +    G  +L++ +   L+  G        +  L PAL RG L  VG     E  
Sbjct: 262 AVLNEVRSEGGEIILFIDEMHTLVGAGKADGAMDASNLLKPALARGELHCVGATTLDEYR 321

Query: 362 IARQRLPGFIDCFETLRLPE---MDSVRARRVL-DLFAGHAKNTLSIEIERPALDTGYRL 417
              ++       F+ + + E    D++   R L + +  H K    + I   AL     L
Sbjct: 322 KHVEKDAALARRFQPVMVEEPTVEDTISILRGLKEKYEQHHK----VRISDSALVAAAAL 377

Query: 418 LGRYVRYDSFPGKAV 432
             RY+     P KA+
Sbjct: 378 SNRYITDRFLPDKAI 392